RetrogeneDB ID:
retro_mputfur_1531
Organism:
Location:
GL897214.1:163276-163771 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.41 %
Coverage:
80.68 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
NFYB
Parental gene aliases:
No gene alias available
Parental gene description:
nuclear transcription factor Y, beta [Source:HGNC Symbol;Acc:7805]

Genomic region (view in browser)





>retro_mputfur_1531
ATGACAACCAATGGCGATAGCGCTAGGACAGATGCTTCTCTAATAGGCACAGCTGTGCAC
ATGGGAGGAAGCCACTATGTGATTCAGACTCATGATGACAATGAGCACAGCATGAATGAT
CCTGAAGACAAAAATGGCTCAAAAAACAGTTTCAGAGAACACGATACCTATCTTCCAACT
GCAAATGTAGCAAGGATAATGAAAATGTCATACCTCAAATGGAAAAGACTGTAAAATGCT
AAGGACGGTGTTCAAGAATGAGTAGTGAGCTCATCAGCTTTATAACATCTGAAGCAAATG
AAAGATGCCATCAAGAGAAACAGAGGACAATCAAGGGAGAAGATATTCTTTTTGTCATGC
TGACCTCAGGCTGTGACAGTTATGTTGAACTTCTTAAAATTATCCTTTCAGAAATTCAGA
GAAGCTATGAAAGGAGAGAAAGGAGTTGGTGGAAGAGTCATAGCTACAGATGGACTAAGT
GAAGAACTTACAGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTMDGDSATTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMK-NAIPQTGKIAKDAKECVQECVSEFISFITS
MT..GDSA.TDAS..G..A...GGSHYVIQ.HDD.E.SMND.ED.NGSK.SFRE.D.YLP.ANVARIMK.N.IPQ..K..K....C.....SE.ISFITS
Retrocopy
MTTNGDSARTDASLIG-TAVHMGGSHYVIQTHDDNEHSMNDPEDKNGSKNSFREHDTYLPTANVARIMK/NVIPQMEKTVKC*GRC-SRMSSELISFITS


Parental protein
EASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYL-QKFREAMKGEKGIGGTVTATDGLSEELTE
EA.ERCHQEK..TI.GEDILF.M.T.G.DSYVE.LK..L.QKFREAMKGEKG.GG.V.ATDGLSEELTE
Retrocopy
EANERCHQEKQRTIKGEDILFVMLTSGCDSYVELLKIIL\QKFREAMKGEKGVGGRVIATDGLSEELTE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide