RetrogeneDB ID:
retro_mputfur_1536
Organism:
Location:
GL897223.1:1078473-1078885 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.09 %
Coverage:
93.24 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
TMEM216
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane protein 216 [Source:HGNC Symbol;Acc:25018]

Genomic region (view in browser)





>retro_mputfur_1536
AGAGGAAAAGGGCTGTCCTCCACCCCCTGGAAAACCTGTTCTTTCTGAGTGGGTGGTATT
ATGCTACCTATTCCTGCTGGAACTCTTCATATTTCTGTACGAAGTTCTACTGCTACCATC
TCCAACAGCTGATCTAGTAGAGGATGTGGTGATACCTCTTGTGAGCCTTGGAATTGAAGG
AGTGTGAGTCTTTTTTGGTACAAAAGGAATTCTCTGCCATTGTAAGATGCTACTTGGTAA
TAGGATGGACTTGACCTTCCCGTCTACCATGCTGTCCTCCTACTGCCTGCTGCTGCAGAC
CTCCATGCTCTGCCAGGATGTCATCGTGAACAGCATCTTGCTCTTCTGTGGTTTGGAGCT
GCTGCCGCTTTAGGTACTCACCCTGCCTGTTTCCTCCAGTATGGAGAGGATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RGKRLSSTP-LEILFFLNGWYYATY-FLLELFIFLYKALLLPYPTANLVLDVVMLLLYLGIEVIRLFFGTKGNLCQRKMPLGISVALTFPSAMMASYYLL
RGK.LSSTP.LE.LFFL.GWYYATY.FLLELFIFLY..LLLP.PTA.LV.DVV..L..LGIE....FFGTKG.LC..KM.LG....LTFPS.M..SY.LL
Retrocopy
RGKGLSSTP/LENLFFLSGWYYATY/FLLELFIFLYEVLLLPSPTADLVEDVVIPLVSLGIEGV*VFFGTKGILCHCKMLLGNRMDLTFPSTMLSSYCLL


Parental protein
LQTYVLRLEAIMNSILLFFCGSELL-LEVLTLTAFSSMDRI
LQT..L....I.NSILL.FCG.ELL.L.VLTL...SSM.RI
Retrocopy
LQTSMLCQDVIVNSILL-FCGLELLPL*VLTLPVSSSMERI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide