RetrogeneDB ID:
retro_mputfur_1538
Organism:
Location:
GL897223.1:1115838-1116253 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.01 %
Coverage:
93.24 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
TMEM216
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane protein 216 [Source:HGNC Symbol;Acc:25018]

Genomic region (view in browser)





>retro_mputfur_1538
AGAGGAAAAGGGCTGTCCTCCACTCCCTGGAAATCCTGTTCTTTCTAAGTGGGTGGTATT
ATGCTACCTATTCCTACTCTTCATTTTCTTCATATTTCTGTACAAATCTCTCCTGCTACC
ATCTCCAACGCCCAGCCTAGTAGCGGATTTGGTTATACCTCTCCTGAGCTTCGGAATTGA
AGGAGTGTGACTCTTTATTGGAACGAGAGGAATCTTCTGCCATTGAAAGATGCCACTTGA
TATTAGTATGGAATTGACCTTCCTGTCTGCCATGCTGTTGTCCTACTGCCCCCTGCTGCA
GACCTTTGTGCTCCGCTGGGAAGTCATCGTGGACAGCATCTTGCGCTTCTGTGGTTCGGA
GCTGCTGCCGCTTGAGGTGCTCACCCTGGCTATTTTCTCCAGTATGGACAGAATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RGKRLSSTP-LEILFFLNGWYYATY-FLLELF-IFLYKALLLPYPTANLVLDVVMLLLYLGIEVIRLFFGTKGNLCQRKMPLGISVALTFPSAMMASYYL
RGK.LSSTP.LEILFFL.GWYYATY.FLL..F.IFLYK.LLLP.PT..LV.D.V..LL..GIE...LF.GT.G..C..KMPL.IS..LTF.SAM..SY..
Retrocopy
RGKGLSSTP/LEILFFLSGWYYATY/FLLFIFFIFLYKSLLLPSPTPSLVADLVIPLLSFGIEGV*LFIGTRGIFCH*KMPLDISMELTFLSAMLLSYCP


Parental protein
LLQTYVLRLEAIMNSILLFFCGSELL-LEVLTLTAFSSMDRI
LLQT.VLR.E.I..SIL.F.CGSELL.LEVLTL..FSSMDRI
Retrocopy
LLQTFVLRWEVIVDSILRF-CGSELLPLEVLTLAIFSSMDRI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide