RetrogeneDB ID:
retro_mputfur_1541
Organism:
Location:
GL897225.1:69753-70232 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.61 %
Coverage:
82.9 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
RHOA
Parental gene aliases:
No gene alias available
Parental gene description:
ras homolog family member A [Source:HGNC Symbol;Acc:667]

Genomic region (view in browser)





>retro_mputfur_1541
TATGTACCCACAGTGTTTGAGAACTATATGGCAGATATTGAAGTTGATGGAAATTAGGTA
GAGTTGGCTTTGTGGGATACAGCTGGGCAGGAAGATTATCACCACTTGAAGCCTCTCTCC
TATCCAGACACTGATGTTATACTGATGTGTTTCTCCATTGACAGCCATGATAGTTTAGAA
AACATCCCATAAAAATGGACCCCAGAAGTCAAGCACTTTTGTCCCAACCTGCCCATCATC
CTGGTTGAGAATAAGAAGGATCTTCAGAATGATTAGCACACAAGTTGGGATCTTGCCAAG
ATGAAGCAGGAGCTGGTGAAGCTAGAAGAAGGCAGAGATATAGCAAACAGGATTGGCGCT
TTTGGGTACATGGAGTGTTCAGCAAAGACTGAAGACAGAGTGAGGAGGTTTTTGAAATGA
TCATGAGAGCTGCTTTGCAAGCCAGATGTATGAAGAAAAAATATGGGTATTTTGTCTTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAK
YVPTVFENY.ADIEVDG..VELALWDTAGQEDY..L.PLSYPDTDVILMCFSIDS.DSLENIP.KWTPEVKHFCPN.PIILV.NKKDL.ND.HT...LAK
Retrocopy
YVPTVFENYMADIEVDGN*VELALWDTAGQEDYHHLKPLSYPDTDVILMCFSIDSHDSLENIP*KWTPEVKHFCPNLPIILVENKKDLQND*HTSWDLAK


Parental protein
MKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR-EVFEMATRAALQARRGKKKSGCLVL
MKQE.VK.EEGRD.ANRIGAFGYMECSAKT.D.VR.EVFEM..RAALQAR..KKK.G..VL
Retrocopy
MKQELVKLEEGRDIANRIGAFGYMECSAKTEDRVR/EVFEMIMRAALQARCMKKKYGYFVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide