RetrogeneDB ID:
retro_mputfur_1543
Organism:
Location:
GL897227.1:22612-23271 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.1 %
Coverage:
66.47 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1543
ATGGTGAAAGAAACCACTTACTATGATGTTTGGGCATCAAACCCAATGCCACCCAAGAAG
AATTGAAAAAGGCCCACAGGAAACTGACCTTGAAGTACCACCCTGGTAAGAAACCAAATG
AAGGAGAGAAGTTTAAACAGACATCTCAGGCTTAGGAATTACTCTCTGATGCAAAGAAAA
GGGAATTACATGACAAAGGAGGTGAACAGGCAGTTAAAGAAGGTAGACCCAGTGGTGACT
TTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAAGAATGCAGAGTGAAA
GGAGAGGTAAAAATGTCCTGTATCAGCCCTCAGTAACCTTAGACGATTTATATAATGGTG
CAACAAGAAAACTGGCTCTGCAAAAGAACGTGATATGCGATAAATGTGAAAGTTGAGGTA
GTAAGAAAGGAGCAGTCGAATGTTGTCCCAATTGCCGATGTACTGAAATGCAAATAAGAA
TTCATCAGATAGGACCTGGAATGGTTCAGCACATTCAATCTGTGTGCATGGAGTGCCAGG
GCCATGGGGATCGGATCAGACCTAAAGATAGATGTAAAAGCTGCAATGGAAGGAAGATAG
TTAGAGAGAAGATTCTAGAAGTTCATATTGACAAAGGCATGAAAGATGGCCAGAAGATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKETTYYDV-LGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQ
MVKETTYYDV.LG.KPNATQEELKKA.RKL.LKYHP.K.PNEGEKFKQ.SQA.E.LSDAKKREL.DKGGEQA.KEG...G.FGSPMDIFDMFFGGG.RMQ
Retrocopy
MVKETTYYDV/LGIKPNATQEELKKAHRKLTLKYHPGKKPNEGEKFKQTSQA*ELLSDAKKRELHDKGGEQAVKEGRPSGDFGSPMDIFDMFFGGG-RMQ


Parental protein
RERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGR
.ERRGKNV..Q.SVTL.DLYNGATRKLALQKNVICDKCE..G.KKGAVECCPNCR.T.MQIRIHQIGPGMVQ.IQSVCMECQGHG.RI.PKDRCKSCNGR
Retrocopy
SERRGKNVLYQPSVTLDDLYNGATRKLALQKNVICDKCES*GSKKGAVECCPNCRCTEMQIRIHQIGPGMVQHIQSVCMECQGHGDRIRPKDRCKSCNGR


Parental protein
KIVREKKILEVHIDKGMKDGQKI
KIVRE.KILEVHIDKGMKDGQK.
Retrocopy
KIVRE-KILEVHIDKGMKDGQKM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide