RetrogeneDB ID:
retro_mputfur_1545
Organism:
Location:
GL897227.1:94692-95259 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.73 %
Coverage:
69.6 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1545
GAGTCCAGTTCCAAAACGGAGGGCCTTGATCCAAAAGAATCAGAGCAGTTGAGAAAACTG
TTTATTGGTGGTTTGAGCTTTGAAACAACAGATGATAGTTTAAGAGAACATTTTGAAAAA
TGGGGTACACTTACAGATTGTGTGGTGATGAGAGACCCCCAAACAAAACGGTTCAGAGGG
TTTGGTTTTGTCACTTATTCTTGTGTTGAAGAAGCGAATGCAGCAATGTGTGCCTGACCA
CACAAGGTTGTTGGGCATGTATTAGAGCCAAAGAGAGCTGTTTCTAGAGAGGATTCTGTA
AAGCTTGGTGCCCATCTAACTGAAGAAAATTTTTTGTTGGTGGTATTAGAGAAGATACAG
AAGAATGCTGTTTGAGAAATGACCTCCAAAAATATGGCAAGATTGAAACCATAATAGTTA
TGGAAGACAGGCAGAGTGGAAAAATGAGAATTTGCTTTTTTAAGTTTTGATGATCATGAT
ACAGTTGATAAAATTGTTGTTCAGAAATACCACAGTATTAATGGGCATAACTGTGAAGTG
AAAAAGACCCTTTCTAAACAAGAAATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KESAGLEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSV
..S...EG.DPKE.EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR.RGFGFVTYSCVEE..AAMCA.PHKV.G.V.EPKRAVSREDSV
Retrocopy
ESSSKTEGLDPKESEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRFRGFGFVTYSCVEEANAAMCA*PHKVVGHVLEPKRAVSREDSV


Parental protein
KPGAHLTV-KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF-DDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM
K.GAHLT...K.FVGGI.EDTEE..LR....KYGKIETI.VMEDRQSGK.R...F..F.DDHDTVDKIVVQKYH.INGHNCEVKK.LSKQE.
Retrocopy
KLGAHLTE/RKFFVGGIREDTEECCLRNDLQKYGKIETIIVMEDRQSGKMR-ICFFKF\DDHDTVDKIVVQKYHSINGHNCEVKKTLSKQEI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide