RetrogeneDB ID:
retro_mputfur_1548
Organism:
Location:
GL897229.1:86381-86717 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
87.61 %
Coverage:
54.85 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_1548
AAGATGAAAGAAACTATCATGAACCAGGAGAAACTGGCCAAACTGCAAGCACAAGTGCAC
ATTGGTGGGAAAAGAACTGCTCGCGGAAAGAAGGTGGTTCATAGAACAGCTACAGCAGAT
GATAAAACACTTCAGTTCTCCTTAAAGAAGTTAGGGGTAAACAGTATCTCTGGTATTGAA
GAAGTGAATTTGTTCACAAACCAAAGAACAGTGATCCACTTTAACAACCCCAAAGTTCAG
GCCTCGCAGGCAACGACCACTTCCACCATTACAGGCCATGCTGAGACAAATCAGCTGACA
GAAATGCTACCCAGTATCTTAAACCAACTTGGTGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQL
.MKETIMNQEKLAKLQAQV.IGGK.TAR.KK.VVHRTATADDK.LQFSLKKLGVN.ISGIEEVN.FTNQ.TVIHFNNPKVQAS.A..T.TITGHAET.QL
Retrocopy
KMKETIMNQEKLAKLQAQVHIGGKRTARGKK-VVHRTATADDKTLQFSLKKLGVNSISGIEEVNLFTNQRTVIHFNNPKVQASQATTTSTITGHAETNQL


Parental protein
TEMLPSILNQLGA
TEMLPSILNQLGA
Retrocopy
TEMLPSILNQLGA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide