RetrogeneDB ID:
retro_mputfur_1551
Organism:
Location:
GL897238.1:46306-46839 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.56 %
Coverage:
51.43 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
MTHFD2
Parental gene aliases:
No gene alias available
Parental gene description:
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:7434]

Genomic region (view in browser)





>retro_mputfur_1551
AATGTGTTACCAGTGGTCCCATGGAGTGTCTGGGAAATAATTAAGTGAATGGACATCCCA
ACCCTAGGGAAGAATGTGGTTGTGGTTGGAAGGTCAAAAAATGTTGGAATGCCCATTGCA
GTGCCAATACAGATAGACGGGGCTTGTGAATACCCTGGAGGTGATGCCACTATTACAATA
TTCATTAGTACACTCCCAAAGAGCAAATGAAGAAACAGACAGTTCTTGCAGACATTTTGG
TCTCTGATTCAGGCATTCCCAATCATAGCAGATATGATCAAGGAGGGCATTGCACTGATC
AATATGAAAATAAAAAGAGTTCAAGATCTCATCATGACTAAACCCACCTTGGTTGGAGAG
GTGGATTTTGAAGAAATCAGAAAAAAAGCTGCTTACAGCATTCCAGTCCACAGGGATATT
GGTCCCATGACAATGACGATGTTAACAAAGAATACCATTATTTCAGCAAGAATGTGCTGA
GGCTTAAAGAGTAGGAAGTATTGAAGCCCAAGGAGTGTGGAGTACTAACTAAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SMLPATPWGVWEIIKRTGIPTLGKNVVVAGRSKNVGMPIAMLLHTDGAHERPGGDATVTISHRHTPKEQLKKHTVLADIVVSAAGIPNLITADMIKEGAA
..LP..PW.VWEIIK...IPTLGKNVVV.GRSKNVGMPIA.....DGA.E.PGGDAT.TI.....PK........L..........P..I.ADMIKEG.A
Retrocopy
NVLPVVPWSVWEIIK*MDIPTLGKNVVVVGRSKNVGMPIAVPIQIDGACEYPGGDATITIFISTLPKSK*RNRQFLQTFWSLIQAFP--IIADMIKEGIA


Parental protein
VIDVGINRVQDPITAKPKLVGDVDFEGVRKKAGYITPVPGGVGPMTVAMLMKNTIIAA-KKVLRLEDQEVLKPKERGVATS
.I...I.RVQD.I..KP.LVG.VDFE..RKKA.Y..PV....GPMT..ML.KNTII.A.K.VLRL...EVLKPKE.GV.T.
Retrocopy
LINMKIKRVQDLIMTKPTLVGEVDFEEIRKKAAYSIPVHRDIGPMTMTMLTKNTIISA/KNVLRLKE*EVLKPKECGVLTN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide