RetrogeneDB ID:
retro_mputfur_1556
Organism:
Location:
GL897245.1:245000-245587 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.84 %
Coverage:
67.93 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1556
CGGCGGCCAAAGTCAGTAAAAAGGAGCTCAACTCCAACCATAACCCAGCCGACAAGACCT
CAGAAAAAGAACAGCAAGAAACAATTAAACATATTGATGAAGTACAAAATGAAATAGACA
GACTTAATGAACAAGCCAGTGAGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTCC
ACCAACCATATTTTCAGAAGAAATCGGAATCGATCACCCAAATCCCCAGTTTTGGGGTGA
CAACATTTGTCAACCATCCCCAAGTGTCTGCACTGCTTGGGGAGGATGAAGAGGCGCTGC
ATTCTTTGACAAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTTACAGAATAG
ATTTTTATTTTGATGAAAACCCTTACTTTGAAAACAAAGTTCTCTCCAAAGAATTTCCTC
TGAATGAGAGTGGTGATCCGTCTTCAAAGTCCACTGAAATCAAATGGAAATCTGGAAAGG
ATTTGATGAAACGTTCAAGTCAAACACAGAATAAAGCCAGCAGGGAGAGACAGCATGAGG
CACCAGAGAGCTTCTTCACCTGGTTTACTGACCATTCTGATGCAGGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQPPAPKPGQTSTSQHLHRG-AEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEE
R.P...K...T.T.....R...EKEQQE.I.HIDEVQNEIDRLNEQASEEILKVEQKYNKL.QP.FQK.SE.I..IP.F.VTTFVNHPQVSALLGE.DEE
Retrocopy
RRPKSVKRSSTPTITQPTRP/SEKEQQETIKHIDEVQNEIDRLNEQASEEILKVEQKYNKLHQPYFQKKSESITQIPSFGVTTFVNHPQVSALLGE-DEE


Parental protein
ALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAG
ALH.LTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF.LNESGDPSSKSTEIKWKSGKDL.KRSSQTQNKASR.RQHE.PESFFTWFTDHSDAG
Retrocopy
ALHSLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFPLNESGDPSSKSTEIKWKSGKDLMKRSSQTQNKASRERQHEAPESFFTWFTDHSDAG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide