RetrogeneDB ID:
retro_mputfur_1558
Organism:
Location:
GL897247.1:89362-90157 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.21 %
Coverage:
94.62 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1558
GTGTCTGGAGCCCTTGATGTTCTGCAAATGAAGAAGGATATCCTCAAATTTCTTACAGCA
GGAACCCACTTAGGTGGCCCTAACCTTGACTTCCGAATGGAACAGTGTATCTACAAACGC
AAAAGTGATGGTATCTACATCATAAATCTGAAGAGAACCTGGGAGAAGCTTCTGCTGGCA
GCTTGGGTCATTATTGCCCTTGTAAACCCAGCTGATGTCAGTGTCATATCATCCAGGAAT
ACTGGCCAGCAAACTGAGCTAAAGTTTGCTGCTGTTACTGGAGCCACTCCTATTGCTGGC
CTCTTCACTCCTGGAACCTTCACGAACCAGATCCAAGCAGCCTTCTGGGAGCCCAGACTT
CTGGTGGTTGCTGATCCCAGGGCTGACCACCAGCCTCTTACAGAGGCTTCTTATGTTAAC
CTGCCTACCATTTTTCTGTGTAACACAGACTCTCCTCTGCGCTATGCGGACGTCGCCATC
CCTTGCAATAACAAGGGAGCTCACTCAGTGGGTCTGAGGTGGTGGATGCTGGCCAGGGAA
GTTCTGTGCATGCATGATACTATTTCCCATGAACATCCATGGGAGGTCGTGCCTGTTCTC
TACTTCTACAGAGATCCTGAGGAGATTGAAAAGGAAGAGCAGGCTGCTGCTTAAAAGGCT
GTGACCAAGGAGGAATTTCAGGATGAATGGACTACTCCAGCTCCCAAGTTTACCGCTACT
CAACCTGAATTCACAGAATGGTCTGAAGGCGTTCAGGTGCCCCCTCGCCCCGTGCCTATT
TAGCAGTTCTCTACT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIA
.SGALDVLQMK..D.LKFL.AGTHLGG.NLDF.MEQ.IYKRKSDGIYIINLKRTWEKLLLAA..I.A..NPADVSVISSRNTGQ...LKFAA.TGATPIA
Retrocopy
VSGALDVLQMKK-DILKFLTAGTHLGGPNLDFRMEQCIYKRKSDGIYIINLKRTWEKLLLAAWVIIALVNPADVSVISSRNTGQQTELKFAAVTGATPIA


Parental protein
GRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPD
G.FTPGTFTNQIQAAF.EPRLLVV.DPRADHQPLTEASYVNLPTI.LCNTDSPLRY.D.AIPCNNKGAHSVGL.WWMLAREVL.M..TIS.EHPWEV.P.
Retrocopy
GLFTPGTFTNQIQAAFWEPRLLVVADPRADHQPLTEASYVNLPTIFLCNTDSPLRYADVAIPCNNKGAHSVGLRWWMLAREVLCMHDTISHEHPWEVVPV


Parental protein
LYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVP--SVPIQQFPT
LYFYRDPEEIEKEEQAAA.KAVTKEEFQ.EWT.PAP.FTATQPE...WSEGVQVP...VPI.QF.T
Retrocopy
LYFYRDPEEIEKEEQAAA*KAVTKEEFQDEWTTPAPKFTATQPEFTEWSEGVQVPPRPVPI*QFST


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide