RetrogeneDB ID:
retro_mputfur_156
Organism:
Location:
GL897137.1:716324-717674 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.44 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
HNRNPH1
Parental gene aliases:
No gene alias available
Parental gene description:
heterogeneous nuclear ribonucleoprotein H1 (H) [Source:HGNC Symbol;Acc:5041]

Genomic region (view in browser)





>retro_mputfur_156
ATGATGCTGAGCACAGAAGGCAGGGAGGGGTTCGTGGTGAAGGTCAGGGGCCTACCCTGG
TCCTGCTCAGCTGATGAAGTGATGCGCTTCTTTTCTGATTGTAAAATCCAAAATGGCACA
TCAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCAAGTGGTGAAGCATTTGTCGAA
CTTGAATCCGAAGATGAAGTGAAATTGGCTTTGAAGAAGGACAGAGAAACCATGGGACAC
AGATACGTTGAAGTTTTCAAGTCCAACAGTGTTGAAATGGATTGGGTGTTGAAGCATACA
GGTCCGAATAGTCCCGATACTGCCAACGATGGCTTCGTCCGGCTTAGAGGACTCCCATTT
GGCTGTAGCAAGGAAGAGATTGTTCAGTTCTTTTCTGGGTTGGAAATTGTGCCAAATGGG
ATGACACTGCCGGTGGACTTTCAGGGGCGGAGCACAGGGGAAGCATTTGTGCAGTTTGCT
TCACAGGAGATAGCTGAAAAGGCCTTAAAGAAACACAAGGAAAGAATAGGGCACAGGTAC
ATTGAAATCTTCAAGAGTAGCCGAGCTGAAGTCCGAACCCACTACGACCCCCCTCGAAAG
CTCATGGCTATGCAGCGGCCAGGTCCCTATGATAGGCCGGGGGCTGGCAGAGGGTATAAT
AGTATTGGCAGAGGGGCAGGGTTTGAAAGGATGAGGCGTGGTGCCTATGGTGGAGGGTAC
GGAGGCTATGATGACTATGGTGGCTATAATGATGGGTATGGCTTTGGGTCTGATAGATTC
GGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCTGATCATAGATACGGAGATGGTGGG
TCCAGTTTCCAGAGCACCACAGGGCACTGTGTACACATGAGGGGATTACCTTACAGAGCC
ACTGAGAATGATATTTACAATTTTTTCTCACCTCTTAACCCCATGAGAGTGCACATTGAA
ATTGGACCCGATGGCCGAGTTACTGGTGAGGCAGATGTTGAATTTGCTACCCATGAAGAT
GCTGTGGCAGCAATGGCAAAAGACAAAGCTAATATGCAACACAGATATGTGGAGCTCTTC
TTGAATTCTACTGCAGGAACAAGTGGGGGCGCATATGACCACAGCTATGTAGAACTCTTT
TTGAATTCTACAGCAGGGGCAAGTGGTGGTGCTTATGGTAGTCAAATGATGGGAGGGATG
GGCTTATCCAACCAGTCTAGTTATGGGGGTCCTGCTAGTCAGCAGCTGAGTGGTGGCTAC
GGAGGTGGTTATGGTGGTCAGAGCAGTATGAGTGGATACGACCAAGTTCTGCAGGAAAAC
TCCAGTGACTATCAGTCAAACCTCGCTTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHT
MML.TEG.EGFVVKVRGLPWSCSADEV.RFFSDCKIQNG..GIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSN.VEMDWVLKHT
Retrocopy
MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHT


Parental protein
GPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK
GPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG.TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK
Retrocopy
GPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK


Parental protein
LMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
LMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDY.GYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGS.FQSTTGHCVHMRGLPYRA
Retrocopy
LMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRA


Parental protein
TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGM
TENDIYNFFSPLNP.RVHIEIGPDGRVTGEADVEFATHEDAVAAM.KDKANMQHRYVELFLNSTAG.SGGAY.H.YVELFLNSTAGASGGAYGSQMMGGM
Retrocopy
TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGM


Parental protein
GLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQENSSDFQSNIA
GLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQENSSD.QSN.A
Retrocopy
GLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQENSSDYQSNLA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide