RetrogeneDB ID:
retro_mputfur_1565
Organism:
Location:
GL897258.1:52398-53289 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.94 %
Coverage:
77.4 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
LDHA
Parental gene aliases:
No gene alias available
Parental gene description:
L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:C6L2F2]

Genomic region (view in browser)





>retro_mputfur_1565
TGTGCCATCAGTATCTTAATGAAGGATTTGGCAGATGAACTTCCTCTTGTTGATGTCATG
GAAGACAAACTGAAGGGAGAGATGATGGATCTCCAGCATGGAAGCCTTTTCCTTAGAACA
CCAAAATTTGTCTCTGGCAAAGACTATAATGCGACTGTAAACTCCAAGCTGGTTAGTATC
ACAGCTGGGGCACGTCAGCAAGAGGGAGAAAGCTGTCTTAATTTGGTTCAGCATAACGTG
AACATCTTTAAGTTCATCATTCCTAATGTAAAATACAGCCCAAACTGGAAGTTGCTTGTT
GTTTCCAATGCAGTGGATATCTTGACTTATGTGACTTGGAAGATAAGGGGCTTTCCCGAA
AACTGCGTTATTGGAAGTGATTGCAGTCTGGATTCAGCTTGGTTCCATCACCTAATGAGG
GAAAGGCTGGGAGTTCACCCATTAAGCTGTCACGGGTGGATCCTCGGGGAGCATGGAGAC
TCCAGTGTCCCTGTATGGAGTGGAGTAAACATTGCTGGTGTGCCTCTGAAGAATCTGCAC
CCTGACTTAGGCACTGATGCAGATAAAGAACAGTGAAAAGAGGTTCACAAACAGGTGGTT
GACAGTGCCTATGAGGTGATCAAATTGAAAGGCTACACTTCCTGGGCCACTGGACTGTCT
GTGGCAGATTTGGCAGAAAGTATAATGAAGAATCTTAGGCGGGTGCATCCAATCTCCACC
ATGATTAAGGGACTCTATGGAATAAAAGATGATGTCTTCCTTAGTGTTCCTTGTATCCTG
GGACAGAATGGAATTTCAGATGTTGTGAAGGTGACTCTATCTCCTGAGGAAGAGGCCTGT
TTGAAGAAGAGTGCAGATACTCTCTGGGGGAACCAAAAGGAGCTGCAGTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
CAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL
CAISILMKDLADEL.LVDVMEDKLKGEMMDLQHGSLFLRTPK.VSGKDYN.T.NSKLV.ITAGARQQEGES.LNLVQ.NVNIFKFIIPNV.KYSPN.KLL
Retrocopy
CAISILMKDLADELPLVDVMEDKLKGEMMDLQHGSLFLRTPKFVSGKDYNATVNSKLVSITAGARQQEGESCLNLVQHNVNIFKFIIPNV-KYSPNWKLL


Parental protein
VVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNIAGVSLKNLHPDLGTDADKEQWKEVHKQV
VVSN.VDILTYV.WKI.GFP.N.VIGS.C.LDSA.F..LM.ERLGVHPLSCHGWILGEHGDSSVPVWSGVNIAGV.LKNLHPDLGTDADKEQ.KEVHKQV
Retrocopy
VVSNAVDILTYVTWKIRGFPENCVIGSDCSLDSAWFHHLMRERLGVHPLSCHGWILGEHGDSSVPVWSGVNIAGVPLKNLHPDLGTDADKEQ*KEVHKQV


Parental protein
VDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKDDVFLSVPCILGQNGISDVVKVTLTTEEEARLKKSADTLWGIQKELQF
VDSAYEVIKLKGYTSWA.GLSVADLAESIMKNLRRVHPISTMIKGLYGIKDDVFLSVPCILGQNGISDVVKVTL..EEEA.LKKSADTLWG.QKELQF
Retrocopy
VDSAYEVIKLKGYTSWATGLSVADLAESIMKNLRRVHPISTMIKGLYGIKDDVFLSVPCILGQNGISDVVKVTLSPEEEACLKKSADTLWGNQKELQF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide