RetrogeneDB ID:
retro_mputfur_1567
Organism:
Location:
GL897258.1:430867-431353 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.17 %
Coverage:
78.74 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
NFYB
Parental gene aliases:
No gene alias available
Parental gene description:
nuclear transcription factor Y, beta [Source:HGNC Symbol;Acc:7805]

Genomic region (view in browser)





>retro_mputfur_1567
GGCGACAGTGCTATGACAGATGCTTCTCTTCTAGGCACAGCTGCACACTACATGGGAGGA
AGCCACTATGTGATTCAGTCTCATGATGACACGGAGCACAGCGTGAATGATCATGAAGAC
ACAAATGGTTCAAAACACAGTATCAGAGAACGCGGTATCTATCTTCCAACTGCAAATGTA
GCAAGGATAATGAAAAATGTCATACCTCAAATGGGAAAGGTTGTAAAATGCCAAGGACTG
TGTTCAAGAATGAGTAGTGAGCTCATCAACTTTGTAACATCTGAAGCAAATTGAAGATGC
CATCAAGAGAAACGGAGGACAATCAAGGGAGAAGAAATTCTCTTTGCCATGCTGACCTCA
GGTTGTGACGGTTCTGTTGAACTTCTAAAATTATCCTCTCAGAAATTCAGAGAGGCTATG
AAAGGAGAGAAAGGAGTTGGTGGAAGACTCAGAGCTACAGATGGACTAAGTGAAGAACTT
ACAGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GDSATTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASER
GDSA.TDAS.LG..A.Y.GGSHYVIQ.HDDTE.S.NDHEDTNGSK.S.RE..IYLP.ANVARIMKN.IPQ.GK..K....C.....SE.I.F.TSEA..R
Retrocopy
GDSAMTDASLLGTAAHYMGGSHYVIQSHDDTEHSVNDHEDTNGSKHSIRERGIYLPTANVARIMKNVIPQMGKVVKCQGLC-SRMSSELINFVTSEAN*R


Parental protein
CHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGTVTATDGLSEELTE
CHQEKR.TI.GE.ILFAM.T.G.D..VE.LKL..QKFREAMKGEKG.GG...ATDGLSEELTE
Retrocopy
CHQEKRRTIKGEEILFAMLTSGCDGSVELLKLSSQKFREAMKGEKGVGGRLRATDGLSEELTE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide