RetrogeneDB ID:
retro_mputfur_1574
Organism:
Location:
GL897269.1:626510-627038 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.19 %
Coverage:
100.0 %
Frameshifts:
6
Stop codons:
6


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1574
ATAGAAGCCTTGGGCACACTGTGATAGTACATGGTGGTGGGGTACTTTCTGCCAACTCCA
TATGCCATAATCCACCCCCTAGCACATGCAAATCTTTTTACTTGATCACAGTGTCACCAA
GTCCTGCTCCTGGTACCTTGTGTCTTAGTTAAAGAAGATGAAAAAGTCTTCAGAGGAAAT
TGTCCACTGTGGACAGGTATTTGAGAAATCCCCTTGTGGATTAAGAACTTTGGTATCTGG
CTGTGCTATGACTCCCACAGTGGCACCCGCAACATGTGCTGGGAGTACCAGGACATGTAC
TGCTGCACATGCTGTCATCCAGTGTTACTGAGGCATGGATGCCCAGCACTGTGCCTGGGC
CCACTTGATCCAGATCATGAAGTTGTATGAGATTGCAGCCAGCAAGTGCTGCTAAATGGC
AATTAAGCAGTTCCATGACCCCCAGATCAAGATCCCCATTGCCACCACTGAGTCCTATGC
TACCAGCATGAGCTATGCTTCACCACCAAGAGGCCCAACACTATCTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKASGTLREYKVVGRCLPTPK-CRTPPLY-RMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSP-LRVKNFGIWLRYDSRSGTHNMYREY
..A.GTL..Y.VVG..LPTP..C..PP....M.IF...H.V.KS..WY.VS.LKKMKKSS.EIV.CGQVFEKSP.L..KNFGIWL.YDS.SGT.NM..EY
Retrocopy
IEALGTL**YMVVGYFLPTPY/CHNPPPS/HMQIFLLDHSVTKSCSWYLVS*LKKMKKSSEEIVHCGQVFEKSP/LWIKNFGIWLCYDSHSGTRNMCWEY


Parental protein
RDL-TTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFP-LP-HRVLRRQHKPRFTTKRPNTFF
.D..T.A.AV.QCY..M.A.H.A.AH.IQIMK..EIAASKC...A.KQFHD..IK.P.LP.H.VL..QH...FTTKRPNT.F
Retrocopy
QDM\TAAHAVIQCY*GMDAQHCAWAHLIQIMKLYEIAASKCC*MAIKQFHDPQIKIP\LP\H*VLCYQHELCFTTKRPNTIF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide