RetrogeneDB ID:
retro_mputfur_1584
Organism:
Location:
GL897280.1:227775-228294 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.69 %
Coverage:
62.01 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1584
ATTTCCAGAGCCTTTAGTGTCCTCCACATGAAGGAGGCGGCTGTCCTTAAAATCTTTGCA
ACAAGAACCCTCTTAAGTGGCACCAAGCTTGACTTCCAAGTGGAACTGTACATCTCTAAA
GAGAAAAATGAAGGCATATACAGCTTAAATCTGAAGAAAACCTGGGAGAAGCTTCTGCTG
GTGGCTTGTACCATTGTTACCATTGAAAACTTGGTTGCTGCCAGTGTCATATACTCCAGT
AATAGTGGCCAGTGAGCTGTGTTCAAGTTTGCTGTTGTTCCTGGATCCAGTCCTACCGCT
GGCCACGTCACTCCCCGAAACTTCACTAGCCAGCTCCAGACAGCCTCCCTGGAGCCATGA
CTTCTGGTGATGTCTGGTCCCCGGGCTGATCACCAGCCTGCCACCTAAGTGTCTTATGTT
AATCTGCCTACCAATGCTCTGTATTACACAGACACTCCTCTGTGCCATGTGGGCATTGCC
ATTCCATGCAACAACAAGGCAGAACCCTCAGTGGGTCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIA
.S.A..VL.MKE..VLK..A..T.L.GT.LDFQ.E.YI.K.K..GIY..NLK.TWEKLLL.A..IV.IEN....SVI.S.N.GQ.AV.KFA...G..P.A
Retrocopy
ISRAFSVLHMKEAAVLKIFATRTLLSGTKLDFQVELYISKEKNEGIYSLNLKKTWEKLLLVACTIVTIENLVAASVIYSSNSGQ*AVFKFAVVPGSSPTA


Parental protein
GRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGL
G..TP..FT.Q.Q.A..EP.LLV...PRADHQP.T..SYVNLPT.AL..TD.PL..V.IAIPCNNK...SVGL
Retrocopy
GHVTPRNFTSQLQTASLEP*LLVMSGPRADHQPAT*VSYVNLPTNALYYTDTPLCHVGIAIPCNNKAEPSVGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide