RetrogeneDB ID:
retro_mputfur_1587
Organism:
Location:
GL897288.1:246083-247344 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
92.76 %
Coverage:
83.73 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1587
ATGTCCGTCAGGTTGACCCAGAAGTCCTACAAGGTGTCCAACTCCAGACCCCGGGGCCGT
CAGCAGCCGCTCCTACACCAGCGGGCCTGGCTCCCGCATGAGCTCGTCCACCTTCTCCCG
GGTGGGCGGCAGCTTCCAGGGGGGCCTGAACAGCAGCATGAGTGTGGTCAGGGGCTACGG
GGGTATGGGGGGCATCACGGCCGTCTCAGTGAACCAGAGCCTGCTGAGCCCCCTTAAGCT
GGCAGTGGATCCCAACATCCAAGCTGTGCGCACCCAGGAGAAGGAGCAGATCAAGACCCT
CAACAACAAATTTGCCTCCTTCATCGACAAGGTGAGGCACCTGGAGCAGCAGAACAAAGT
TCTGGAGACCAAGTGGAGCCTCCTACAGCAGCAGAAGACCACGCGGAGCAACATAGACAA
CATGTTTGAGAGCTACATCAGCAACCTCCAGCGGCAGCTGGACACCCTGGGCCAGGAGAA
GCTGGAGGTGGAGCTTGGCAACATGCAGGGGCTGGTGGAGGACTTCAAGAATAAATATGA
GGAGGAGATCAAAGAGCGTGCAGAAATGGAGAATGAATTTGTCCTCATCAAGAAGGATGT
GGACGAAGCTTATATGAACAAGGTAGAACTCGAGCCCCGCCTGGAAGGGCTGACCAACAA
GATCAACTTCTTAAGGCGGCTGTATGAAGAGATCCGTGAGCTGCAGTCCCAGATCTCGGA
CACGTCTGTGGTCCTATCCATGGACAACAGCCGCTCCCTGGACCTGGATGGCATCATCTC
CAAGGTCAAGGCCCAGTATGAGGACATCACTAACCGTAGCCGGGCTGAGGCTGAGACCAT
GTACCAGATCAAGTACGAGGAGCTGCTGACATTGGCTGGGAAGCACAGGGATGACCTCCG
TCGCACGAAGACGGAGATTTCTGAGATGAATCGGAGCATCAGCCGACTCCAGGCTGAGAT
CGAGGCCCTCAAAAACCAGAGGGCTGCCCTGGAGGCTGCCATTGCCGATGCTGAGCAGCA
CGGGGAGCTGGCCATTAAGGATGCCAATGGCAAGGTGGCCGAGCTGGAGGCCGCCCTGCA
GCGAGCCAAGCAGGACATGGCCCGGCAGCTGCGCGAGTACCAGTAGCTCATGAACGTCAA
GTTGGCCCTGGACATTGAGATTGCCACCTACTGCAAGCTGCTGGAAGGCGAGGAAAGCCG
GCTGGAGTCTGGGATGCAGAACATGAGTATCCATACTAAGACCACCAGCGGCTTCTCAGG
T


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSVRVTQKSYKVSTSGPR-AFSSRSYTSGPGSRISSSAFSRVGGSFRGGLNSSMSVVGGYGGGAGGMGGITAVSVNQSLLSPLKLEVDPNIQAVRTQEKE
MSVR.TQKSYKVS.S.PR.A.SSRSYTSGPGSR.SSS.FSRVGGSF.GGLNSSMSVV.GY....GGMGGITAVSVNQSLLSPLKL.VDPNIQAVRTQEKE
Retrocopy
MSVRLTQKSYKVSNSRPR\AVSSRSYTSGPGSRMSSSTFSRVGGSFQGGLNSSMSVVRGY----GGMGGITAVSVNQSLLSPLKLAVDPNIQAVRTQEKE


Parental protein
QIKTLNNKFASFIDKVRHLEQQNKVLETKWSLLQQQKTARSNIDNMFESYISNLRRQLDTLGQEKLKLEVELGNMQGLVEDFKNKYEEEIKERADMENEF
QIKTLNNKFASFIDKVRHLEQQNKVLETKWSLLQQQKT.RSNIDNMFESYISNL.RQLDTLGQEKL..EVELGNMQGLVEDFKNKYEEEIKERA.MENEF
Retrocopy
QIKTLNNKFASFIDKVRHLEQQNKVLETKWSLLQQQKTTRSNIDNMFESYISNLQRQLDTLGQEKL--EVELGNMQGLVEDFKNKYEEEIKERAEMENEF


Parental protein
VLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDLDGIISEVKAQYEDIANRSRAEAETMYQIKYEELQTLA
VLIKKDVDEAYMNKVELE.RLEGLT..INFLR.LYEE.IRELQSQISDTSVVLSMDNSRSLDLDGIIS.VKAQYEDI.NRSRAEAETMYQIKYEEL.TLA
Retrocopy
VLIKKDVDEAYMNKVELEPRLEGLTNKINFLRRLYEE-IRELQSQISDTSVVLSMDNSRSLDLDGIISKVKAQYEDITNRSRAEAETMYQIKYEELLTLA


Parental protein
GKHGDDLRRTKTEISEMNRSISRLQAEIEALKNQRAALEAAIADAEQRGELAIKDANGKVAELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRK
GKH.DDLRRTKTEISEMNRSISRLQAEIEALKNQRAALEAAIADAEQ.GELAIKDANGKVAELEAALQRAKQDMARQLREYQ.LMNVKLALDIEIATY.K
Retrocopy
GKHRDDLRRTKTEISEMNRSISRLQAEIEALKNQRAALEAAIADAEQHGELAIKDANGKVAELEAALQRAKQDMARQLREYQ*LMNVKLALDIEIATYCK


Parental protein
LLEGEESRLESGMQNMSIHTKTTSGFSG
LLEGEESRLESGMQNMSIHTKTTSGFSG
Retrocopy
LLEGEESRLESGMQNMSIHTKTTSGFSG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide