RetrogeneDB ID:
retro_mputfur_1591
Organism:
Location:
GL897294.1:272329-273667 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.05 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1591
AGTCCTGGCCTCTCATCTTACTCTCCGAACAGCATGAGCTTCACCACCCACTCCACCTTC
TCTTCCAACTATCGGTCCCTGGGCTCCATGCAGTCACCCAGCCACCGGGTCCGGCCTGTC
AGCAGCGCGGCCAGCGTCGTCTATGCAGGCGCCGGAGGCTCAGGCTCCCGGATCTCCGTA
TCCTGCTCCTCCAGCTTCCGGGGCGGTTGGGGGTCCGGGGGCCTGGCCACGGGGTTGGCC
GCCGGGATGGCCAGGGGTCTGGCCGGCATAGGGGGCATGCAGGGCAAGAAGGAGACCATG
CAAGACCTGAATGACCGCCTGGCCTCCTACCTGGAGAGGGTGAGGAGCCTAGAGGCAGAT
AATCAGAGACTGGAGGTGAGAATCCGGGAACACCTGGAGAAGAAGGGACCCCAGGTCAGA
GACTGGGAGCATTACTTCAAGACCATCAAGGAGCTGAGGTCTCAGATTTTTGCAAGTTCT
GTGGACAATGCCCGCATCGTTCTGCAGATTGACAATGCCCATCTTGCTGCTGATGACTTC
AGAGTCAAGTATGAGACGGAACTGGCCATGCGCCAGTCCGTGGAGAGTGACATCCACGGG
CTCCGCAAGGTCATCGATGACACCAATGACACTAGGCTGCAGCTGGAGACAGAGATTGAG
GCTCTCAAGGAGGGGTTGCTCTTTATGAAGAAGAACCATGAGGAGGAAGTAAAGGGTCTA
CAGAACCAAATTGCCAACTCCGGGTTGACCGTGGAGTTGGATGCCCCCAAGTCTCAGGAC
CTCAGCAAGATCATGGCAGACATCCGGGCCCAGTATGATGAGCTGGCTCGGAAGAACTGA
GAGGAGCTGGACAAATACTGGTCCCAGCAGATTGAGGAAAGCACCACAGTGATCACCACA
CAGACCTCAGAGATAGAAGAGGCTGAGATGACCCTCACGGAGCTGAGACGTACCGCCCAG
TCCTTGGAGATCAACCTGGATTCAATGAGAAACCTGAAGGCCAGCTTAGAGAACAGCCTC
AGGGAGGTTGAAACCCGCTACGCCATGCAGATGGAGCAGCTCAACGGGGTCCTGCTGCAC
CTGGAGTCTGAACTGTCCCAGACCCGGGCAGAGGGGCAGCGCCAGGCCCAGGAGTACGAA
GCCCTGTTGAATGTCAAGGTCAAGCTGGAGGCTGAGATCGCTACCTACCGTCGCCTGCTG
GAAGATGGGGAGGACTTCAATCTCAGTGACACCCTGGACAGCAGCAGCTCCATGCAAACC
ATACAGAAAACCACTACCCGCAAGACTGTGGACGGCAAGGTCATGTCTGAGACCAATGAC
ACCAAAGTTCTGAGGCGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SPGLSSYSPNSMSFTTHSTFSSNYRSLGSMQSPSHRVRPVSSAASV-YAGAGGSGSRISVSRSTSFRGGWGSGGLATGLTAGMARGLAGIGGMQGEKETM
SPGLSSYSPNSMSFTTHSTFSSNYRSLGSMQSPSHRVRPVSSAASV.YAGAGGSGSRISVS.S.SFRGGWGSGGLATGL.AGMARGLAGIGGMQG.KETM
Retrocopy
SPGLSSYSPNSMSFTTHSTFSSNYRSLGSMQSPSHRVRPVSSAASVVYAGAGGSGSRISVSCSSSFRGGWGSGGLATGLAAGMARGLAGIGGMQGKKETM


Parental protein
QDLNDRLASYLERVRSLEADNQRLEVRIREHLEKKGPQVRDWGHYFKTIEELRSQIFASSVDNARIVLQIDNARLAADDFRVKYETELAMRQSVESDIHG
QDLNDRLASYLERVRSLEADNQRLEVRIREHLEKKGPQVRDW.HYFKTI.ELRSQIFASSV.................DFRVKYETELAMRQSVESDIHG
Retrocopy
QDLNDRLASYLERVRSLEADNQRLEVRIREHLEKKGPQVRDWEHYFKTIKELRSQIFASSVXXXXXXXXXXXXXXXXXDFRVKYETELAMRQSVESDIHG


Parental protein
LRKVIDDTNVTRLQLETEIEALKEELLFMKKNHEEEVKGLQNQIANSGLTVELDAPKSQDLSKIMADIRAQYDELARKNREELDKYWSQQIEESTTVITT
LRKVIDDTN.TRLQLETEIEALKE.LLFMKKNHEEEVKGLQNQIANSGLTVELDAPKSQDLSKIMADIRAQYDELARKN.EELDKYWSQQIEESTTVITT
Retrocopy
LRKVIDDTNDTRLQLETEIEALKEGLLFMKKNHEEEVKGLQNQIANSGLTVELDAPKSQDLSKIMADIRAQYDELARKN*EELDKYWSQQIEESTTVITT


Parental protein
QTSEIGEAEMTLTELRRTAQSLEINLDSMRNLKASLENSLREVETRYAMQMEQLNGVLLHLESELSQTRAEGQRQAQEYEALLNVKVKLEAEIATYRRLL
QTSEI.EAEMTLTELRRTAQSLEINLDSMRNLKASLENSLREVETRYAMQMEQLNGVLLHLESELSQTRAEGQRQAQEYEALLNVKVKLEAEIATYRRLL
Retrocopy
QTSEIEEAEMTLTELRRTAQSLEINLDSMRNLKASLENSLREVETRYAMQMEQLNGVLLHLESELSQTRAEGQRQAQEYEALLNVKVKLEAEIATYRRLL


Parental protein
EDGEDFNLSDALDSSSSMQTIQKTTTRKIVDGKVVSETNDTKVLRR
EDGEDFNLSD.LDSSSSMQTIQKTTTRK.VDGKV.SETNDTKVLRR
Retrocopy
EDGEDFNLSDTLDSSSSMQTIQKTTTRKTVDGKVMSETNDTKVLRR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide