RetrogeneDB ID:
retro_mputfur_1598
Organism:
Location:
GL897316.1:153691-154037 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.27 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPLP1
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]

Genomic region (view in browser)





>retro_mputfur_1598
ATGGCTTTGGTCTTGGAGCTCATCTGCATCTACTTGGCCCTCGTCCCACACCGTAAGAAG
TGATGGTTCATGGAGGATAAGATCAGTGCCCTCATTAAAGCGGCGGATGTAAATGTTGAA
CCTTTTGGGCTGGGCTTGTTTGGAAGGCCCTGGCCAATGTCAACATCAGGGCCTCGTCTG
TAATGTCTGTAACGCAGGGGCTGGTGGACCTGCGTCAGCAGCCAGGCCTCTGCCAGCAGG
AGGTCCTGCTCCCTCCACCAGGGCTGCCCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAA
AGAATCAGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEP-FWPGLFAKALANVNIGS-LICNV---GAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVE
MA.V.EL.CIY.AL..H.......EDKI.ALIKAA.VNVEP.FW.GL..KALANVNI...L.CNV...GAGGPA.AA...PAGGPAPST.AAPAEEKKVE
Retrocopy
MALVLELICIYLALVPHRKK*WFMEDKISALIKAADVNVEP/FWAGLVWKALANVNIRA/LVCNVCNAGAGGPASAARPLPAGGPAPSTRAAPAEEKKVE


Parental protein
AKKEESEESDDDMGFGLFD
AKK.ESEESDDDMGFGLF.
Retrocopy
AKK-ESEESDDDMGFGLFN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide