RetrogeneDB ID:
retro_mputfur_1605
Organism:
Location:
GL897338.1:17301-18037 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.75 %
Coverage:
86.55 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1605
ATGGCCCCCAAACGCCAGTCTTGGCTCCCGCCTCAAACGAAGAAAATGAGACAGCCTCCT
GCCCCAAGCCAGGGCAGTCGTCAACATCTCAGCACTTGCATAAAGGAGAAAAAGAACAGC
AAGAAGCAATTGAACATATTGATGAAGTACAAAATGAAATAGACAGATTTAATGAACAAG
CCAGTGAGGAGATTTTGAAAATAGAACAGAAATATAACAAACTCCGCCAACCATTTTTTC
AGAAGAGGTCGGAATTGATCGCCAAATCCCGTTTTTGCGTAACAACATTTGTCAACCATC
CACAAGTGTCTGCACTGCTTGGGGAGGAGGATGAAGATGTGCTGCATTACTTGACAAGAG
TTGAAGTGACAGAATTTGAAGATATTAAAGCAGGTTACAGAATAGATTTTTATTTTGATG
AAAACCCTTACAAGTTCTCTCCAAAGAATTTCATCTGAATGAGAGTGGTGATCCATCTTC
AAAGTCCACTGAAATCAAATGGAAATCTGGAAAGGATTTGACAAAGCATTCAAGTCAAAC
ACAGAATAAAGCCAGCAGGAAGAGACAGCTTGAGGAACCAGAAAGGTTTTTCACCTGGTT
TACTGACCATTCTGATGCAGGTGCAGATGAGTTAGGATAAGTCATCGAAGATGATATTTG
GCCAAATCCATTACAGTACTACTTGGTTCCCAATATGGATGACGAAGAAGGGGAAGGAGA
AGAGGGTGATGATGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPKRQSSLPPQMKKPRQPPAP-KPGQTSTSQHLHRGAEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTF
MAPKRQS.LPPQ.KK.RQPPAP.KPGQ.STSQHLH.G.EKEQQEAIEHIDEVQNEIDR.NEQASEEILK.EQKYNKLRQPFFQKRSELIAK...F.VTTF
Retrocopy
MAPKRQSWLPPQTKKMRQPPAP/KPGQSSTSQHLHKG-EKEQQEAIEHIDEVQNEIDRFNEQASEEILKIEQKYNKLRQPFFQKRSELIAK-SRFCVTTF


Parental protein
VNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEE
VNHPQVSALLGEEDE..LHYLTRVEVTEFEDIK.GYRIDFYFDENPY...K...K.F.HLNESGDPSSKSTEIKWKSGKDLTK.SSQTQNKASRKRQ.EE
Retrocopy
VNHPQVSALLGEEDEDVLHYLTRVEVTEFEDIKAGYRIDFYFDENPY---KFSPKNF/HLNESGDPSSKSTEIKWKSGKDLTKHSSQTQNKASRKRQLEE


Parental protein
PESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEGEGEEDDDD
PE.FFTWFTDHSDAGADELG.VI.DDIWPNPLQYYLVP.MDDEEGEGEE.DDD
Retrocopy
PERFFTWFTDHSDAGADELG*VIEDDIWPNPLQYYLVPNMDDEEGEGEEGDDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide