RetrogeneDB ID:
retro_mputfur_1609
Organism:
Location:
GL897356.1:277103-278168 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.44 %
Coverage:
60.1 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ATIC
Parental gene aliases:
No gene alias available
Parental gene description:
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase [Source:HGNC Symbol;Acc:794]

Genomic region (view in browser)





>retro_mputfur_1609
ATGGCACCCAGCCAGCTCGCCTTATTTAGTGTCTCTGACAAAACGGGCCTCGTGGAATTT
GCCAGAAACCTGACTTCTGTTGGTTTGCATCTGATCGCCTCTGGAGGGACTGCGAAAGCT
CTGAGGGAGGCGGGCCTGGCAGTCAGAGATGTCTCTGAGCTGACGGGATTTCCTGAAATG
TTAGGGGGGCGTGTGAAAACCTTGCATCCTGCCGTCCATGCTGGAATCTTGGCTCGTAAT
ATCCCAGAAGATAATGCTGACATGGCCAGACTTGATTTCAGTCTTATAAGAGTTGTCGTC
TGCAATCTGTATCCCTTTGTGAAGACAGTGGCTTCTCCAGATGTAACTGTTGAACAGGCT
GTTGAGCAGATTGATATTGGCGGAGTAACCCTACTGAGAGCAGCAGCCAAAAACCATGCT
CGGGTGACAGTAGTATGTGAACCCGAGGACTATGCAGCTGTGTCCACAGAGATGCAGAGC
TCCGACAGCAAAGACACCTCCTTGGAGACCAGACGTCAGTTAGCCTTGAAGGCCTTCACT
CATACGGCACAATATGATGAAGCAATTTCAGATTACTTCAGGAGACAGTATAGTAAAGGA
ATATCTCAGATGCCTTTGAGGTATGGAATGAACCCTCATCAGACTCCTGCCCAGTTATAC
ACGCTGAAGCCCAAGCTTCCCATCACAGTTCTAAATGGAGCCCCTGGATTTATAAACTTG
TGTGATGCTTTGAATGCCTGGCAGCTGGTGAAGGAACTCAAAGAAGCTTTAGGCATTCCA
GCTGCTGCCTCTTTCAAACATGTCAGCCCAGCAGGTGCTGCTGTTGGAATTCCACTCAGT
GAAGACGAGGCCAAAGTCTGCATGGTCTATGATCTGTATAAAACGCTTACACCCATATCA
ACTGCATATGCAAGAGCAAGAGGGGCTGATAGGATGTCTTCATTTGGTGACTTTGTTGCA
TTATCTGATGTTTGTGATGTTCCTACTGCCAAAATTATCTCCAGAGAGGTATCTGATGGT
ATTGTTGCCCCAGGATATGAAGATGAAGCTTTGAAAATACTTTCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPSQLALFSVSDKTGLVEFARNLTSVGLHLIASGGTAKALREAGLAVRDVSELTGFPEMLGGRVKTLHPAVHAGILARNIPEDNADMARLDFSLIRVVV
MAPSQLALFSVSDKTGLVEFARNLTSVGLHLIASGGTAKALREAGLAVRDVSELTGFPEMLGGRVKTLHPAVHAGILARNIPEDNADMARLDFSLIRVVV
Retrocopy
MAPSQLALFSVSDKTGLVEFARNLTSVGLHLIASGGTAKALREAGLAVRDVSELTGFPEMLGGRVKTLHPAVHAGILARNIPEDNADMARLDFSLIRVVV


Parental protein
CNLYPFVKTVASPDVTVEQAVEQIDIEGGVTLLRAAAKNHARVTVVCEPEDYAAVSTEMQSSDSKDTSLETRRQLALKAFTHTAQYDEAISDYFRRQYSK
CNLYPFVKTVASPDVTVEQAVEQIDI.GGVTLLRAAAKNHARVTVVCEPEDYAAVSTEMQSSDSKDTSLETRRQLALKAFTHTAQYDEAISDYFRRQYSK
Retrocopy
CNLYPFVKTVASPDVTVEQAVEQIDI-GGVTLLRAAAKNHARVTVVCEPEDYAAVSTEMQSSDSKDTSLETRRQLALKAFTHTAQYDEAISDYFRRQYSK


Parental protein
GISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDALNAWQLVKELKEALGIPAAASFKHVSPAAGAAVGIPLSEDEAKVCMVYDLYKTLTP
GISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDALNAWQLVKELKEALGIPAAASFKHVSPA.GAAVGIPLSEDEAKVCMVYDLYKTLTP
Retrocopy
GISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDALNAWQLVKELKEALGIPAAASFKHVSPA-GAAVGIPLSEDEAKVCMVYDLYKTLTP


Parental protein
ISTAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIVAPGYEDEALKILS
ISTAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIVAPGYEDEALKILS
Retrocopy
ISTAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIVAPGYEDEALKILS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide