RetrogeneDB ID:
retro_mputfur_161
Organism:
Location:
GL897333.1:35897-36848 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.44 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
FOXR1
Parental gene aliases:
No gene alias available
Parental gene description:
forkhead box R1 [Source:HGNC Symbol;Acc:29980]

Genomic region (view in browser)





>retro_mputfur_161
ATGGACATAAAACTAAAAAATTCTGAATTCTGGTACAGTCTCCATGGCCAGGTCCCAGGG
CTGCTGGACTGGGACATGGGGAGTGAGTTCTTCTTGCCCTGCACCACAGACCAGTGCCAC
TTAGCTGAGCAGAACCTTGCCAAATATAGACTCCGAGTAATGGAACCCCCAAATATGTCT
CAAGACAGCAGACCCAGTTTGGACAAAGATGGTCCTGACTCTGAACCTAACCTGTGGATG
TGGGTAAATCCCAACATCACATGCCCCCTTGGCAGCCAGGAGACCCTAAAGCCTAGTAAG
GAAAAGGATGTGACAAGCATGCTTCCTTACCCTCAGCCACTCCCAAAGGAAGAAAAGTCT
AACTACTCAAAGGCTGCAGTGATGGAGTCACTGCCAACTTCCTCCAGCAAGAAATCTTCC
CCACAGAAGTGGTTCACTTATTCCCCAGGTGACTGGGAGTTCACAGAAGAAAAAACTGAG
GAACAAGATGACAAATGCTCTGTGTCTCTTCAATCTCCTAACAAAGGGGAGTGCTTCCAG
AACCAGAAGTTATGGCAAGGCAACAGCCAGGAGAGGAGGTCCTGGCCCCGCCCTCCCCTC
AATTACAGTCACCTAATAGCCCTGGCATTAAGAAACAGCCCCCCCTGTGGCCTCAATGTG
CAAGAGATTTACAATTTCACCCGACACCATTTCCCTTTTTTTTGGACAGCTCCAAATGGC
TGGAAAAACACCATCCGCCACAACCTCTGTTTCCTGAGCAGCTTTGAGAAGGCACCAGTC
AACCTTCAGAATGGAACCAATGCAAAGCCACGGTCTTGCCTCTGGCGGCTTACTGAGGAG
GGACATCGTCGTTTTCAGGAAGAAACTCGTGCCTTAGCCTATGCTCGGAGGGAAAGCATC
CAACAGTGCATGAGCCAGCCAGATGTGATTACTTCCCTCTTTGGCCTTTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VDLKLQHHDLWASLHGQVPGLLDWDMGNESFLAFTTAHLPPAEQNLARYRLRIVEPPKEPVNKTASPDDDGPALEPNLWMWVNPNIVFPPGKLEVPEPRQ
.D.KL.....W.SLHGQVPGLLDWDMG.E.FL..TT.....AEQNLA.YRLR..EPP........S.D.DGP..EPNLWMWVNPNI..P.G..E...P..
Retrocopy
MDIKLKNSEFWYSLHGQVPGLLDWDMGSEFFLPCTTDQCHLAEQNLAKYRLRVMEPPNMSQDSRPSLDKDGPDSEPNLWMWVNPNITCPLGSQETLKPSK


Parental protein
REHLPSTLPSPQLPPKEQDFANASCSSEAAALESESLPSSSEQSPPRKRKRFASSPSTWELTEEEAEDQDDRSSVALPPPHKRAPLQSRRLRQANSQEGR
.....S.LP.PQ.P.......N....S.AA..ES....SS...SP....K.F..SP..WE.TEE..E.QDD..SV.L..P.K....Q...L.Q.NSQE.R
Retrocopy
EKDVTSMLPYPQ-PLPKEEKSNY---SKAAVMESLPTSSSKKSSP---QKWFTYSPGDWEFTEEKTEEQDDKCSVSLQSPNKGECFQNQKLWQGNSQERR


Parental protein
LWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRQHFPFFRTAPEGWKNTVRHNLCFRDSFEKVPVSMQVGASTRPRSCLWKLTEEGHRRFAEEARALV
.W.RPPLNY.HLIALALRNS.PCGLNVQ.IY.FTR.HFPFF.TAP.GWKNT.RHNLCF..SFEK.PV..Q.G....PRSCLW.LTEEGHRRF.EE.RAL.
Retrocopy
SWPRPPLNYSHLIALALRNSPPCGLNVQEIYNFTRHHFPFFWTAPNGWKNTIRHNLCFLSSFEKAPVNLQNGTNAKPRSCLWRLTEEGHRRFQEETRALA


Parental protein
STRLESIQQCMSQPDVMPFLFDL
..R.ESIQQCMSQPDV...LF.L
Retrocopy
YARRESIQQCMSQPDVITSLFGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide