RetrogeneDB ID:
retro_mputfur_1626
Organism:
Location:
GL897424.1:3324-4043 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.5 %
Coverage:
54.42 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1626
TATTGAGAGAAAAAAGAAAAAAAAAATGAAGAATACAATGCATTTCATGAACTGAAGAAG
CAGCCGGTCACCAAGGGTACAGGGGTGACTCCAGTTTCTCTCCAGGTAAGACTCCCTTTG
GCTTGTATTCCCACCAGCCAGTGCTGCTCACAGGGCTTGCCACTGGGCACTGCAGACAGG
AGCACCTTGTGTGGGAGGGGCTCTGCCAAGCATTCCGAGCTCTGGGGAACTAAAATGAAT
GTCGGGTTTTCAGCTGCTACCAAAGATAATGAACATAAGCATTCACTGACCAAGACTCTA
GCCAGAAAGCCTCCACATGTGGCCATATCTGGGAGTACCCCAAAAGGCCAGGCTGTGCTC
GGGATAGACAAGATAAAGACCACAATTGGGAGTTCTGCTTCTGTCGTTACACCATTCAAG
CTGACAACTCAGGCAGCACAGACTCCAGTCTCCAGCAAGAAGCCAGTGTTTGATTTCAAA
GCAAGTCTGTCTCGTGCCCTCAACTATGAGCCCCACAAAGGCAAACTGAAACCATGGGGT
CAATCTAAAGAAAATAATTCTCTGAAGGAACATGTAAACAGAGTTAGCTTCCACAAAAAA
ACTTGCAAACAACCTCCTCTCCAAACTAGGGAGAAACATTGGAAACAACATGAGCAAAAA
CAAAGGAGAAGAAAGCAAAAGTTTTAAGAGCTCAAAAATACCTCATTATGGCTGAAGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YIERKKKNFEEHNAFHELKKQPATKGAVVTPVPLRERLPLACTPTSQRRSQGQPLGAAGRSTLCGKGSAKRSVLSATKMNVRFSAATKDNEHKRSLTKTP
Y.E......EE.NAFHELKKQP.TKG..VTPV.L..RLPLAC.PTSQ..SQG.PLG.A.RSTLCG.GSAK.S.L..TKMNV.FSAATKDNEHK.SLTKT.
Retrocopy
Y*EXXXXXXEEYNAFHELKKQPVTKGTGVTPVSLQVRLPLACIPTSQCCSQGLPLGTADRSTLCGRGSAKHSELWGTKMNVGFSAATKDNEHKHSLTKTL


Parental protein
ARKSPHVTISGSTPKGQAVLGIYKIKTTTGNSASVVTPFKLTTQAAQTPVSSKKPVFDLKASLSRPLNYEPHKGKLKPWGQPKENNSLKEHVNRVSFHKK
ARK.PHV.ISGSTPKGQAVLGI.KIKTT.G.SASVVTPFKLTTQAAQTPVSSKKPVFD.KASLSR.LNYEPHKGKLKPWGQ.KENNSLKEHVNRVSFHKK
Retrocopy
ARKPPHVAISGSTPKGQAVLGIDKIKTTIGSSASVVTPFKLTTQAAQTPVSSKKPVFDFKASLSRALNYEPHKGKLKPWGQSKENNSLKEHVNRVSFHKK


Parental protein
TYKQPPLQTREEQRKQHEQRR-KEKKAKVLGARRGLIMAED
T.KQPPLQTRE...KQHEQ...KEKKAKVL.A...LIMAED
Retrocopy
TCKQPPLQTREKHWKQHEQKQ/KEKKAKVLRAQKYLIMAED


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide