RetrogeneDB ID:
retro_mputfur_1627
Organism:
Location:
GL897425.1:95840-96550 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.08 %
Coverage:
72.42 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_mputfur_1627
GTACACCAGACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGAT
GGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGGGGAGGAAGCAAATGTG
ACAGGCCCTGGTGGAGTTCCAGTGCAAGTCAGTAAATACACAGCAGACCGTCACCATTAT
AGATGGTATCCACGTCCCAGGGGTCCTCCATGGAATTACCAGCAAAATTACCAGAATAGT
GAGAGTGGGGAAAAGAACGAGGGATCAGAAAGTGCTCCCGAGGCCAGGCCCAACAGCGCC
CGCCCTACTGCAGGCAACGGTTCCCACCTTACTACACGAGGAGACCCTATGGGCGTCGAC
CACAGCATTCCAACCCTCCAGGGCAGGGAGAAGTGATGGAAGGTGCTGACAACCAGGGTG
CAGGAGAACAAGGTAGACCAGTGAGACAGAAGATGTATCGGGGTGATAGACCACAATTCC
GCAGGGGTCCTCCTAGCCAAAGACAACCTGGAGGGAATGGCAACCAGGAGGAAAATCAAG
GAGATGAGACCCAGGGTCAGCAGCCACCTCAATGTCAGTACCGCCACAACTTCAATTACC
GACACAGACGCCCAGAAAACCCTAAACCACAAGATGACAAAGAGACAAAAGCAGCCGATC
CACCAGCTGAGAATTCGTCTGTTCCCGAGGCTGAGCAGGGCGGGGCTGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRHRGPPHNYQQNYQNSESGEKNEGSESAPE-GQAQQ
VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG.E.ANVTGPGGVPVQ.SKY.ADR.HYR.YPR.RGPP.NYQQNYQNSESGEKNEGSESAPE.GQAQQ
Retrocopy
VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGGEEANVTGPGGVPVQVSKYTADRHHYRWYPRPRGPPWNYQQNYQNSESGEKNEGSESAPE/GQAQQ


Parental protein
RRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRN
R.PY.R.RFPPYY.RRPYGRRPQ.SNPP.QGEVMEGADNQGAGEQGRPVRQ.MYRG.RP.FRRGPP.QRQP...GN.E..ENQGDETQGQQPPQ..YR.N
Retrocopy
RPPYCRQRFPPYYTRRPYGRRPQHSNPPGQGEVMEGADNQGAGEQGRPVRQKMYRGDRPQFRRGPPSQRQPGGNGNQE--ENQGDETQGQQPPQCQYRHN


Parental protein
FNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE
FNYR.RRPENPKPQD.KETKAADPPAENSS.PEAEQGGAE
Retrocopy
FNYRHRRPENPKPQDDKETKAADPPAENSSVPEAEQGGAE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide