RetrogeneDB ID:
retro_mputfur_163
Organism:
Location:
GL897094.1:3489003-3490716 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.08 %
Coverage:
98.28 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_163
CACAAAAAGCAGCTAGACTCGCTGCGAGAGAGGTTGCAGCGGAGGCGGAAGCAGGACTCC
GGGCACTTGGATCTACGAAATCCAGAGGCAGCACTGTCTCCCACCTTCCACAGTGACAGC
CCGTTGCCTACTGCACCCACTTCTGGTGGCCCTAAGCCCAGCACAGCTTCAGCAGTTCCT
GAGCTAGCTACAGACCCTGAATTAGAGAAGAAATTGCTACACCACCTCTCTGATCTGGCC
TTAACATTGCCCACTGATGCTGTGTCCATCCGTCTTGCCATCTCCACGCCAGATGCCCCT
GCCACTCAAGATGGGGTAGAAAGCCTCCTACAGAAGTTTGCAGCTCAGGAGCTGATTGAG
GTAAAACGAGGTCTCTTACAAGATGACGCACATCCCACTCTTGTGACCTATGCTGATCAT
TCCAAACTCTCTGCCATGATGGGCGCTGTGGCAGAAAAGAAGGGCCCTGGGGAGGTAACA
GGGACTATCACAGGGCAGAAGCGGCGTGCAGAGCAGAACTCAGCCACAGTAGCTGCCTTT
GCTAGCTCTTTGGCCTCTGGCCTGGCCTCTTCAGCATCAGAAGCAGCCAAGGAGCCAACC
AAGAAATCGAGGAAACATGCTGCCTCGGATGTTGATCTGGAGATAGAGAGCCTTCTGAAC
CAAGAGTCTACTAAGGAACAACAGAGCAAGAAGGTCAGTCAGGAGATCCTAGAGCTATTA
AACACAACAACAGCCAAGGAACAGTCCATTGTTGAAAAGTTTCGATCACGAGGTCGGGCC
CAAGTACAGGAGTTCTGTGACTATGGAACCAAGGAGGAGTGCATGAAAGCCAGTGATGCT
GACCAGCCCTGCCGCAAGCTGCACTTCAGACGAATTATCAATAAACACACTGATGAATCA
TTAGGTGACTGCTCTTTCCTTAACACATGTTTCCACATGGACACCTGCAAATACGTTCAC
TATGAAATTGATGCTTGCATGGATTCTGAGGCTCCTGGGAGCAAAGACCATACACCTAGC
CAAGAGCTTGCTCTTACACAGAGTGTTGGAGGGGACTCCAATGCAGATCGACTCTTCCCT
CCTCAGTGGATCTGTTGTGATATCCGCTACTTGGACGTCAGTATCTTGGGCAAGTTTGCA
GTTGTGATGGCTGACCCACCCTGGGATATTCACATGGAGCTGCCCTATGGGACCCTGACA
GATGATGAGATGCGCAGGCTCAACATACCAGTACTGCAGGATGATGGCTTTCTCTTCCTC
TGGGTCACAGGCAGGGCCATGGAGTTGGGCAGAGAGAGTCTGAACCTCTGGGGTTACGAA
CGGGTAGATGAAATTATCTGGGTGAAGACAAATCAACTGCAGCGCATCATTCGGACAGGC
TGTACAGGTCACTGGTTGAACCATGGGAAGGAACACTGCTTGGTTGGTGTCAAAGGAAAT
CCCCAAGGCTTCAACCAAGGTCTGGATTGCAATGTGATCATAGCTGAGGTTCGTTCTACC
AGTCATAAACCAGATGAAATCTATGGCATGATTGAGAGACTATCCCCTGGCACTCGCAAG
ATTGAGTTATTTGGACGACCACACAATGTGCAGCCCAACTGGATCACCCTTGGAAACCAA
CTGGATGGGATTCACCTATTAGACCCAGATGTGGTTGCCCGGTTCAAGCAAAGGTATCCA
GATGGTATCATCTCTAAGCCTAAAAATCTATAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HKKQLDSLRERLQRRRKQDSGHLVLDLRNPEAALSPTFRSDSPVPTAPTSGGPKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPD
HKKQLDSLRERLQRRRKQDSGHL..DLRNPEAALSPTF.SDSP.PTAPTSGGPKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPD
Retrocopy
HKKQLDSLRERLQRRRKQDSGHL--DLRNPEAALSPTFHSDSPLPTAPTSGGPKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPD


Parental protein
APATQDGVESLLQKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVTGTITGQKRRAEQNSATVAAFASSLASGLASSASEAAKE
APATQDGVESLLQKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVTGTITGQKRRAEQNSATVAAFASSLASGLASSASEAAKE
Retrocopy
APATQDGVESLLQKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVTGTITGQKRRAEQNSATVAAFASSLASGLASSASEAAKE


Parental protein
PTKKSRKHAASDVDLEIESLLNQQSTKEQQSKKVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRPCRKLHFRRIINKHTD
PTKKSRKHAASDVDLEIESLLNQ.STKEQQSKKVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD.PCRKLHFRRIINKHTD
Retrocopy
PTKKSRKHAASDVDLEIESLLNQESTKEQQSKKVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADQPCRKLHFRRIINKHTD


Parental protein
ESLGDCSFLNTCFHMDTCKYVHYEIDACMDSEAPGSKDHTPSQELALTQSVGGDSNADRLFPPQWICCDIRYLDVSILGKFAVVMADPPWDIHMELPYGT
ESLGDCSFLNTCFHMDTCKYVHYEIDACMDSEAPGSKDHTPSQELALTQSVGGDSNADRLFPPQWICCDIRYLDVSILGKFAVVMADPPWDIHMELPYGT
Retrocopy
ESLGDCSFLNTCFHMDTCKYVHYEIDACMDSEAPGSKDHTPSQELALTQSVGGDSNADRLFPPQWICCDIRYLDVSILGKFAVVMADPPWDIHMELPYGT


Parental protein
LTDDEMRRLNIPVLQDDGFLFLWVTGRAMELGRECLNLWGYERVDEIIWVKTNQLQRIIRTGRTGHWLNHGKEHCLVGVKGNPQGFNQGLDCDVIVAEVR
LTDDEMRRLNIPVLQDDGFLFLWVTGRAMELGRE.LNLWGYERVDEIIWVKTNQLQRIIRTG.TGHWLNHGKEHCLVGVKGNPQGFNQGLDC.VI.AEVR
Retrocopy
LTDDEMRRLNIPVLQDDGFLFLWVTGRAMELGRESLNLWGYERVDEIIWVKTNQLQRIIRTGCTGHWLNHGKEHCLVGVKGNPQGFNQGLDCNVIIAEVR


Parental protein
STSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPNXITLGNQLDGIHLLDPDVVARFKQRYPDGIISKPKNL
STSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPN.ITLGNQLDGIHLLDPDVVARFKQRYPDGIISKPKNL
Retrocopy
STSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPNWITLGNQLDGIHLLDPDVVARFKQRYPDGIISKPKNL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide