RetrogeneDB ID:
retro_mputfur_1631
Organism:
Location:
GL897444.1:34650-35070 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.68 %
Coverage:
66.67 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
HMGB2
Parental gene aliases:
No gene alias available
Parental gene description:
high mobility group box 2 [Source:HGNC Symbol;Acc:5000]

Genomic region (view in browser)





>retro_mputfur_1631
TCAGTTCAATTCTCAGAGTTTTATAAGAAGTGCTTAGCGAGGTGGAGGATCATGTCTGCT
AAAGAGAAAGGAAAATTCGAAGACATAGCAAAGGCAACCAAGGCCCATTATGAAAGAAAA
ATTAAAACTTACATCTCCCCTAAAGAAGAAGCAAAAAAGAAGTTCGAGGATCCCAAATGC
ACCCAAGAAGACTCCTTCAGCCTTTTACTTGTTTTGTTCCGAGTATCACCCAAAAATCAA
AAGAGAACATCCCAACCTATTCATTGGTGATGTTGCAAAGAAACTGGGAGAGATGTGGAA
TAACCCTGCTGCAGATGACAAACAGCCTTTTGAAAGGAGGCTGCTAAGCTGGAGGGAGAA
GTACAGAAAAGATATTGCTGCAGAGCAAGCCAAAGGAAGTCTGATGCAGCAAAAAAGGGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDP-NAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMW
SV.F.EF.KKC..RW..MSAKEK.KFED.AK..KA.Y.R..K.Y..PK...K.K..DP.NAPK..PSAF.LFCSE..PKIK.EHP.L.IGD.AKKLGEMW
Retrocopy
SVQFSEFYKKCLARWRIMSAKEKGKFEDIAKATKAHYERKIKTYISPKEEAKKKFEDP\NAPKKTPSAFYLFCSEYHPKIKREHPNLFIGDVAKKLGEMW


Parental protein
SEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKG-KSEAGKKG
....A.DKQP.E.......EKY.KDIAA..AKG.KS.A.KKG
Retrocopy
NNPAADDKQPFERRLLSWREKYRKDIAAEQAKG/KSDAAKKG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide