RetrogeneDB ID:
retro_mputfur_164
Organism:
Location:
GL896916.1:2178174-2178747 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.11 %
Coverage:
96.92 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Interleukin 29 [Source:UniProtKB/TrEMBL;Acc:G9K5M3]

Genomic region (view in browser)





>retro_mputfur_164
ATGGCGACAGCGTGGGTCCTGGTGCTGGTGACCTTGCTGCTGGGCTTGACTGGAGCGGGC
TCTGTCCCTACTTCCAACCCCACCTCAACCAGAAGGGGCTGCCTCATGAGCAGGTTCCAG
TCTCTGTCACCGAGCGAGCTGAAAGCCATCAGGAAGGCCAAGGATGCCCTAGAAAATGCG
CTCTCGCTGAAGAACTGGAGCTGCGGCTCTTGCCTCTTCCCTCAGGACAGGGACCTGAGA
GTGCTGCAGGCCTGGGAGCGCCCCGTGGCCTTGGAGGCTGAGCTAGCCTTGACGTTGAAG
GTCCTGGGGGCCATGGCTGACTCGTCCCTGGGGGTCGTCCTGGACCAGCCCCTCCGCCTG
CTGCGCCACGTGCACTCGGAGCTCCAGGCTTGTGTCCCAGCTCTGCCCACAGCAGGACCC
AGAGCCCGGGGCCTCCTCCACCACTGGCTGCACCGGCTCCAGAAGGCCCCAAAGGAGTCC
CAGGGCTGCCTCGAGGCCTCCGTCACGTTCAACCTCCTCCGCCTCCTCACATGGGACCTG
AAGTGTGTTGCCAGCGGAGACATGTGTGTCTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAMVWVLLLVTAGLSMATAGPVPTSKPTTTWKGCDIGRFKSLSPRELEAFKMAKDALGN--SLKNWSCSSRLFPRNRDLRQLQVWERPVALEAELTLTLK
MA..WVL.LVT..L....AG.VPTS.PT.T..GC...RF.SLSP.EL.A...AKDAL.N..SLKNWSC.S.LFP..RDLR.LQ.WERPVALEAEL.LTLK
Retrocopy
MATAWVLVLVTLLLGLTGAGSVPTSNPTSTRRGCLMSRFQSLSPSELKAIRKAKDALENALSLKNWSCGSCLFPQDRDLRVLQAWERPVALEAELALTLK


Parental protein
VLETMADRSQGSILDQPLHTLRHIHSELQACVKAQPTVGPHPQGRLHHWLHRLHEASKKESQGCLEASVLFNLFRLLKKDLECVASGDLCV
VL..MAD.S.G..LDQPL..LRH.HSELQACV.A.PT.GP...G.LHHWLHRL..A..KESQGCLEASV.FNL.RLL..DL.CVASGD.CV
Retrocopy
VLGAMADSSLGVVLDQPLRLLRHVHSELQACVPALPTAGPRARGLLHHWLHRLQKA-PKESQGCLEASVTFNLLRLLTWDLKCVASGDMCV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide