RetrogeneDB ID:
retro_mputfur_1640
Organism:
Location:
GL897571.1:16184-17230 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.43 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_1640
AGTACCCCCGCCTGAAATCACGTCACAACCTTAACCACACCTGCCGCCTGCCATTGCCTT
TGGACCATGGACCCTCGCAAAGTGAGCAAGCTTCAGGCTTTCGTGAAAATGTGTAAGCAG
GATCTGGCATTCTGCACACCAAGGAAATGCATTTCCTGCAGGAGTGGGTGGAGAGCATGG
GGGTTAAAATACCACCTGCCACTCATAAAACTAAATTCAAAGACAGTATCAAGGAAGAAA
AACCAGATAGTAAGAAGGCGGAGGAAAACATAAAGACAGATGAACCATCAAGTGAGGAGA
GTGATCTAGAAATTGACAATGAAGGTGTGATTGAACCAGATACTGATACCCCTCAAGAAA
TGGGAGATGAAAATGTAGAGATAACTGAGGGAATGATGGATCAGGCAAATGATAAAAAAG
TGGCTGCCATTGATGCCCTAAATGATGGTGAACTACAGAAAGCCACTGACTTTTTCACAG
ATGCCATCAAAATAAATCCTCACTTGGCCATTCTGTATGCCAAGAGTGCCAGTGTCTTAA
ACAAATTACAGAAGCCAAATGCTGCCATTTGAAACTGTGACAGAGCTATTGAAATAAATC
CTGATTCAGTTCAGCCTTATAAGTGGTGCAGGAAAGCACATAGACTTCTGGGCCATTGTG
AAGAAGCAGCACATGATCTTGCCCTTGCTTGTAAACTGGATTATGATGAAGATGCTAGTG
CAATGCTGAAAGAAGTTCAACCAAGGGCCCAGAAAATTGCTGAACATCGGAGAAAATATG
AGATAAAACGTGAAGAGCGAGAGATCAAAGAAAGAATAGAAAGGGTTAAGAAGGCTCGGG
AAGAACATGAGAGAGCCCAGAGGGAGGAAGAAGCCAGACAACAATCGGGAGCTCAGTATG
GCTCTTTCCCAGATAGCTTTCCTGGGGGAATGCCTGGTAATTTTTCTGGAGGAATGCCTG
GAATGGCAAGGGGGATGCCTGGAATGGCAAGAATGCCTGGGCTCAATGAAATTCTTAGTG
ATCTGGAAGTTCTTGCAGCCATGCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
STRAWNRVATPAALAACHCLWTMDPRKVSELRAFVKMCKQD-PSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSE
ST.A.N.V.T....AACHCLWTMDPRKVS.L.AFVKMCKQD....LHT.EM.FL.EWVESMG.KIPPATHKTK..DSIKEEKPDSKKAEENIKTDEPSSE
Retrocopy
STPA*NHVTTLTTPAACHCLWTMDPRKVSKLQAFVKMCKQD/SGILHTKEMHFLQEWVESMGVKIPPATHKTKFKDSIKEEKPDSKKAEENIKTDEPSSE


Parental protein
ESDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEI
ESDLEIDNEGVIEPDTD.PQEMGDEN.EITE.MMDQANDKKVAAIDALNDGELQKA.D.FTDAIK.NP.LAILYAK.ASV..KLQKPNAAI..CDRAIEI
Retrocopy
ESDLEIDNEGVIEPDTDTPQEMGDENVEITEGMMDQANDKKVAAIDALNDGELQKATDFFTDAIKINPHLAILYAKSASVLNKLQKPNAAI*NCDRAIEI


Parental protein
NPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQ
NPDS.QPYKW..KAHRLLGH.EEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYE.KREEREIKERIERVKKAREEHERAQREEEAR.QSGAQ
Retrocopy
NPDSVQPYKWCRKAHRLLGHCEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYEIKREEREIKERIERVKKAREEHERAQREEEARQQSGAQ


Parental protein
YGSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEILSDPEVLAAMQ
YGSFP..FPGGMPGNF.GGMPGMA.GMPGMA.MPGLNEILSD.EVLAAMQ
Retrocopy
YGSFPDSFPGGMPGNFSGGMPGMARGMPGMARMPGLNEILSDLEVLAAMQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide