RetrogeneDB ID:
retro_mputfur_1642
Organism:
Location:
GL897621.1:13404-14049 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.4 %
Coverage:
92.74 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
FTH1
Parental gene aliases:
No gene alias available
Parental gene description:
ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976]

Genomic region (view in browser)





>retro_mputfur_1642
AGAGCCAGCCCTCCGCCATCTCCTCACAGCGTCCTCGGACCGCTGCAAGCCCCCCGTCGC
CGCTCCAGCGCCGCGCAGCCGCTGCCAGCCGCCGCCATGACGACCGCGTCCCCTTCGCAG
GTGTGCCAGAACTACCACCAGGACTCGGAGGTCGCCATCAACCGCCAGATCAACGTGGAG
CTCTGCGCCTCTTACGTCTACCTGTCCATGTCTTACTACTTTGACAGTGATGATGTGGCT
TTGAAGAACTTCGCCAAATATTTTCTCCACCAATCTCATGAGGAGAGGGAACATGCTGAG
AAATTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCTTCCTTCAGGATATCAAGAAA
CCAGACCGTGATGATTGGGAGAATGGGCTGAATGCAATGGAGTGTGCATTACACTTGGAA
CAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCCACTGATAAAAATGACCCC
CATTTGTGTGACTTCATTGAGACTCATTACCTGAATGAGCAGGTGAAATCCATCAAAGAA
TTGGGTGACCACGTAACCAACCTGCGCAAGATAGGGGCCCCCGAATCTGGCATGGCAGAG
TATCTCTTTGACAAGCACACCTTGGGATACAGTGATAGTGAGAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RSSPRPGRPLRASPPPSPHSVLGPLQGPPSPAAAATTTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEERE
R.SP.P.......P...P.......Q..P...AAA.TTASPSQV.QNYHQDSE.AINRQIN.EL.ASYVYLSMSYYFD.DDVALKNFAKYFLHQSHEERE
Retrocopy
RASPPPSPHSVLGPLQAPRRRSSAAQPLP---AAAMTTASPSQVCQNYHQDSEVAINRQINVELCASYVYLSMSYYFDSDDVALKNFAKYFLHQSHEERE


Parental protein
HAEKLMKLQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMG-PESG
HAEKLMKLQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLE.SVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRK.G.PESG
Retrocopy
HAEKLMKLQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEQSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKIGAPESG


Parental protein
MAEYLFDKHTLGNSDSES
MAEYLFDKHTLG.SDSES
Retrocopy
MAEYLFDKHTLGYSDSES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide