RetrogeneDB ID:
retro_mputfur_17
Organism:
Location:
GL896995.1:907344-907866 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.53 %
Coverage:
98.85 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PTP4A1
Parental gene aliases:
No gene alias available
Parental gene description:
protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]

Genomic region (view in browser)





>retro_mputfur_17
ATGGCTCCAACGAGCCGGCCAGCGCCCGTGGAAGTCACGTACAGGAACATGAGATTCCTT
ATTACACACAGCCCAACCAGTGCAACCTTAAACAAGTTTATAGAAGAACTTAAGAAACAC
GGAGTTACTACAATAGTAAGAGTATGTGAAGCCACCTACGACACTGCTCTCGTGGAGAAA
GAAGGCATCCAGGTTCTGGATTGGCCTTTCGATGACGGGTCATCGCCATCTAACCAGATT
GTCGACGACTGGCTGAGTCTCGTACACCTTAAATTTCGGGAGGAACCTGGCTGTTGTATT
GCTGTCCACTGTGTTGCGGGTCTTGGGAGAACGCCAGTGCTTGTTGCCCTAGCCCTAATT
GAAGGTGGAATGAAAAACGAAGATGCAGTACAGTTTATAAGACAAAAGCGGCGTGGAGCT
TTTAACAGCAAGCAACTTTTGTATTTGGAGAAATACCGTTCTAAAATGCGGCTGCGCTAC
AAGGACTCTAGTGGTCATAGAAACAACTGTTGCATTCAATAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCI
MA...RPAPVEVTY.NMRFLITH.PT.ATLNKFIEELKK.GVTTIVRVCEATYDT.LVEKEGI.VLDWPFDDG..PSNQIVDDWLSLV..KFREEPGCCI
Retrocopy
MAPTSRPAPVEVTYRNMRFLITHSPTSATLNKFIEELKKHGVTTIVRVCEATYDTALVEKEGIQVLDWPFDDGSSPSNQIVDDWLSLVHLKFREEPGCCI


Parental protein
AVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCI
AVHCVAGLGR.PVLVALALIEGGMK.EDAVQFIRQKRRGAFNSKQLLYLEKYR.KMRLR.KDS.GHRNNCCI
Retrocopy
AVHCVAGLGRTPVLVALALIEGGMKNEDAVQFIRQKRRGAFNSKQLLYLEKYRSKMRLRYKDSSGHRNNCCI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide