RetrogeneDB ID:
retro_mputfur_172
Organism:
Location:
GL896945.1:5711171-5711798 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.07 %
Coverage:
98.54 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PPP1R2
Parental gene aliases:
No gene alias available
Parental gene description:
protein phosphatase 1, regulatory (inhibitor) subunit 2 [Source:HGNC Symbol;Acc:9288]

Genomic region (view in browser)





>retro_mputfur_172
ATGGCGGCCTCCACTGCCTCGCACCGGCCGATCAAGGGGATACTGAAGAACAAAAGCTCC
ACTGGTTCCTCAGTGGCTGCCTCTGCCCAGCAGTCGGGAGGGACAATACAGGAGGTCCAG
AGAAAAAAGTCCCAGAAATGGGACGAATCCAACATCCTGGCAACACACCGGCCTGCTTAT
AGAGACTATGACTTCATGAAGATCAACGAGCCCAGCAGCCCCTACTTCAGCCCGCAAGAC
GATGGAGAAGATCCACTGAATGATTCTGAAGCAAAGGAAGCCATGACCCCAGACAACTTA
GCCAAGAAATTCGCCGCCAGTGGTACCTCGGAATTGAACTGCCAGTTGGGAGAGCCGGAG
AGTGACGGAGCACACAGCAGCAAGATCCTTTTCGACAAGCAAGAAAAGCAGCGGCAGTTC
GAAATGAAAAGGAAACTACACTACAACGAAGGCCTGAACCTCAAGCTGGCTAGACAACTC
ATCTCCAAAGACCTCCAACATGAGAAAGACAAGGATGACAACGAAGAAACTCTACATGGT
GACAATAACGAAGACAACACTGCTGCGGAAGAATCCAGTGAAGTTCCTACAAATGACGAA
CTGCAATCCCAGGCATTCTGCACCTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAASTASHRPIKGILKNKSSTTSSVVASAEQPGRSVDEELSKKSQKWDEMNILATYHPADKDYGLMKIDEPSTPYHSMVGDDEDALSDSETNEALTPDIL
MAASTASHRPIKGILKNKSST.SSV.ASA.Q.G....E...KKSQKWDE.NILAT..PA..DY..MKI.EPS.PY.S...D.ED.L.DSE..EA.TPD.L
Retrocopy
MAASTASHRPIKGILKNKSSTGSSVAASAQQSGGTIQEVQRKKSQKWDESNILATHRPAYRDYDFMKINEPSSPYFSPQDDGEDPLNDSEAKEAMTPDNL


Parental protein
AKKLAAAEGSEPKYRVHEQASSEDEDSDLSPEEQEKKRQFEMKRKLHYNEGLNIKLARQLISKDLHDDEEDEEMSETA---AEESMNTEELNQGSTTSDQ
AKK.AA...SE......E..S.....S......QEK.RQFEMKRKLHYNEGLN.KLARQLISKDL..........ET......E.....E......T.D.
Retrocopy
AKKFAASGTSELNCQLGEPESDGAHSSKILFDKQEKQRQFEMKRKLHYNEGLNLKLARQLISKDLQHEKDKDDNEETLHGDNNEDNTAAEESSEVPTNDE


Parental protein
LQNKS
LQ...
Retrocopy
LQSQA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide