RetrogeneDB ID:
retro_mputfur_173
Organism:
Location:
GL896981.1:7824127-7825912 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.17 %
Coverage:
95.81 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_173
ATGTCTGACAACGGGAGCAGCACAGATGGCCTACGAGACTCAGAAAGAAGAAGCCTGCTC
AATAGCCCGGAGGAGCGGTCTGAAGCGGCTGAGACGAGAGAGACATCTTCAGACACGGAG
CTAAGCTTGAATTTGACCGCAGACGACGGCATCCTCTGCGAGGCCACCCCAGAAAGTCAA
GGCACAGACGCAGAAAGTTCAGCTGAAAACGTCAACTTCGAAAGCACCGAAGACTCGGAC
CAGTTCTTCATCTGTGAGGAAACCGTCTTCCCTTACGACCCGGAGGACGAGGAGGAGCAA
GGAGCGGAGGAGGAGAGAGGAGCGGCAGGAGGACACCCTCAGGTACAGTGCCCTGAAGCT
AACCGTGATCAGTATTTATCAGATGAGGATCGGGCCCTGGAGGAGTGGGTGTCCTCCGAA
ATATCTGCCCTGCCCCGCCCTCGCTGGCAAGTTGTTTCCGCTCTTCGTGAGCGGCAGCTG
GGTTCCAGTGCCCGCTTCGTTTACGAGGCCTGTGGCGCAAGAGTCTTTGTGCAGCGTTTC
CACCTGCTCTATGAGCTTGAAGGCCATCATGGTTGTGTCAATACTGTGCACTTCAACCAG
CGTGGCACCTGGCTGGCCAGTAGCAGTGATGATCTTAAAGTGATAGTGTGGGACTGGGTG
CGTCAGCAGCCAGTACTGGAGTTTGCGAGTGGCCACAAAAATAATGTCTTTCAAGCCAAG
TTCCTTCCCAATTGTGGTGATTCCACCCTGGCCATGTGTGCCCGTGATGGGCAGATTCGC
ATAGCAGAGCTGTCTGCTTTACCACACTGCAAGAATACCAAGCGTGTGGCCCAGCACAGG
GGAGCCTCCCATAAGTTGGCTCTGGAGCCAGACTCCCCTTTTCAATTCCTAACTTCAGGC
GAAGATGCAGTTGTTTTCGCCATTGACCTCAGACGAGGCCGGCCGGCTTCCAGAGTGGTG
GTAACCAAAGAGAGGGAGAAGAAGGTGGGGCTGTATGCCATCCATGTGAATCCTGCCAAT
ACTTACCAGTTTGCAGTGGGTGGAAGAGATCAGTTTGTAAGAATTTATGACCAGAGGAAA
ATTAATGAGAATGAGAATAATGGGGTACTTAAGAAATTCTGTCCCCATCACCTAGTCAAC
TGTGATTCTAAAGCCAACATCACCTGCCTCGTGTACAGCCACGATGGCACAGAGCTCCTG
ACCAGTTATAATGATGAAGATATTTATCTCTTCAACTCCTCTGATGGAGATGGAGCCCAG
TATGTTAAGAGATACAAGGGTCACAGAAATAATGCCACAATCAAAGGTGTCAATTTCTAT
GGCCCCAGAAGTGAGTTCATCATGAGCGGCAGTGATTGTGGTCACATCTTCTTCTGGGAA
AAATCATCTCGCCAGATCATTCAGTTCATGGAGGGGGACAAGGGAGGCACCATAAACTGC
CTTGACCCCCATCCTTACCTACCTGTGCTGGCGACCAGTGGCCTAGATCATGATGCTAAG
ATCTGGGCACCCACAGCCAAAGCTACCACTGAGCTGATTGGGTTAAAGAATATGATCAAG
AGAAACAAGCGAGAACGAGATGAAGATCGCATACACCACACTGACCTGTTCGACAGCCAC
ATGCTTTGGTTCCTCATGCGTCACCTGACACAGAGAGGTCATCGCCAGCACTGGGGAGCT
CCTGAAGCTGGAGCCGTGGATGCAGAATCAGATGCGTCTTCCAGTACCTCCAATTCATCT
GAGGAAGACGAGAACCAAGACCGGGTGCAGTGCCTGCCGTCCTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSGAEEGRETSSGIEVEA-SDLSLSLTGDDGGPNRTSTGSRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEEEE---EEEEEEEHPRRRVQRKR
....EE..E.....E......LSL.LT.DDG........S.GTD.ESS.E.....S.ED.....I..E.......E.EEE...EEE.........VQ...
Retrocopy
LNSPEERSEAAETRETSSDTELSLNLTADDGILCEATPESQGTDAESSAENVNFESTEDSDQFFICEETVFPYDPEDEEEQGAEEERGAAGGHPQVQCPE


Parental protein
ASRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQRFRLQHGLEGHNGCVNTLHFNQRGTWLASGSDDLKVVVWDW
A.RDQ..SD..RALE.WVSSE.SALPRPRWQ...ALRER.LGSSARFVYEACGARVFVQRF.L...LEGH.GCVNT.HFNQRGTWLAS.SDDLKV.VWDW
Retrocopy
ANRDQYLSDEDRALEEWVSSEISALPRPRWQVVSALRERQLGSSARFVYEACGARVFVQRFHLLYELEGHHGCVNTVHFNQRGTWLASSSDDLKVIVWDW


Parental protein
VRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKL
VR.QPVL.F.SGHK.NVFQAKFLPN.GDSTLAMCARDGQ.R.AELSA...CKNTKRVAQH.GASHKLALEPDSP..FL..GEDAVVF.IDLR..RPAS..
Retrocopy
VRQQPVLEFASGHKNNVFQAKFLPNCGDSTLAMCARDGQIRIAELSALPHCKNTKRVAQHRGASHKLALEPDSPFQFLTSGEDAVVFAIDLRRGRPASRV


Parental protein
VVTKEKEKKVGLYTIYVNPASTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSAHSDGA
VVTKE.EKKVGLY.I.VNPA.T.QFAVGGRDQFVRIYDQRKI.ENENNGVLKKFCPHHLVN..SKANITCLVYSHDGTELL.SYNDEDIYLFNS...DGA
Retrocopy
VVTKEREKKVGLYAIHVNPANTYQFAVGGRDQFVRIYDQRKINENENNGVLKKFCPHHLVNCDSKANITCLVYSHDGTELLTSYNDEDIYLFNSSDGDGA


Parental protein
QYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIVQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVI
QYVKRYKGHRNNAT.KGVNFYGP.SEF..SGSDCGHIF.WEKSS.QI.QFMEGDKGG..NCL.PHP.LPVLATSGLDHD.KIWAPTA...TEL.GLK..I
Retrocopy
QYVKRYKGHRNNATIKGVNFYGPRSEFIMSGSDCGHIFFWEKSSRQIIQFMEGDKGGTINCLDPHPYLPVLATSGLDHDAKIWAPTAKATTELIGLKNMI


Parental protein
KKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGVGAPDADSEESPSSSDTSDEDEGPDRVQCMPS
K.NKRERDED..HHTDLFDSHMLWFLM.HL.QR.H...W..P..GA.DA.S..S.S.S..S.EDE..DRVQC.PS
Retrocopy
KRNKRERDEDRIHHTDLFDSHMLWFLMRHLTQRGHRQHWGAPEAGAVDAESDASSSTSNSSEEDENQDRVQCLPS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide