RetrogeneDB ID:
retro_mputfur_182
Organism:
Location:
GL896908.1:15095793-15096423 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.96 %
Coverage:
89.86 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Proteinral transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:UniProtKB/TrEMBL;Acc:G9K3N0]

Genomic region (view in browser)





>retro_mputfur_182
CAGGAGAATGGGGAAGAGGAAATAGGGAAGTTGTTGCTGGTGGAATTGTCCAGAATTATT
GATTCAGTCTTTCTATCAAAATGTGAAAATAAATGCAAGATTTGGGGAATTGACACAGAG
AGTCCCATTATACAAGTGGGCAGCTGTGTCCTTGCTGGAGAGTATGAAGACACTCTTGGA
ACCTGTGTTACATTTGAAACAAATGTTGAACATGGTGATGCAGAAGGCAGTAATACAATA
ATGCTAAAATATAAACGTCGTACAATGAAGAAGTTCAGCATGACAAGCACTCTTTTGACA
GAAAAGAAGGAAGGAGAAGAAAGCCTAGGTGGTACGAAATGGCCACAAATCAAGGACGAT
GATTTCTGCTGTAGACCCAACATGATTTGTAGCTTTCTGCATGAAAATGAAGATGACGAC
GTTGTAGCTCTAGCCTCAGATAAATCTTTGGTGTTGGAAGAGCAAGAGATTCAAAGGAAA
GATAATTCAAACCTGAGTTATGAACACAGGAAATCACTGAACTTGGAAGAAAAGAATTCT
GGCCCTCTTACTGATATCCCTTCTTTTGAGATGGAAGGTTATTATTTTTTTTATGGAAAC
TCAAGATACTGCCTTGAAAATCACTCTTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EEEEEEEAEQLVLVELSGIIDSEFLSKCENKCKILGIDTERPILQVDSYVFAGEYEDTLGTCVIFEENVEPGDTEGSDKTVLKYKCHTMKKLSMTRTLLT
.E..EEE...L.LVELS.IIDS.FLSKCENKCKI.GIDTE.PI.QV.S.V.AGEYEDTLGTCV.FE.NVE.GD.EGS....LKYK..TMKK.SMT.TLLT
Retrocopy
QENGEEEIGKLLLVELSRIIDSVFLSKCENKCKIWGIDTESPIIQVGSCVLAGEYEDTLGTCVTFETNVEHGDAEGSNTIMLKYKRRTMKKFSMTSTLLT


Parental protein
EKKEGEENIGGVEWLQIKDNEFSYRPNMICSFLHENEDDDVTP-ASDKSLELEDQEIPTKNNSNLGYEQGKSLNLEVENSGPLIDIPSSETEGYVF
EKKEGEE..GG..W.QIKD..F..RPNMICSFLHENEDDDV...ASDKSL.LE.QEI..K.NSNL.YE..KSLNLE..NSGPL.DIPS.E.EGY.F
Retrocopy
EKKEGEESLGGTKWPQIKDDDFCCRPNMICSFLHENEDDDVVALASDKSLVLEEQEIQRKDNSNLSYEHRKSLNLEEKNSGPLTDIPSFEMEGYYF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide