RetrogeneDB ID:
retro_mputfur_188
Organism:
Location:
GL896898.1:1235332-1237264 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.28 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock cognate 71 kDa protein [Source:UniProtKB/TrEMBL;Acc:G9K4X7]

Genomic region (view in browser)





>retro_mputfur_188
ATGTCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCCTGCGTGGGTGTC
TTCCAGCATGGGAAAGTGGAAATAATTGCCAATGATCAGGGAAACCGGACCACCCCAAGT
TATGTCGCCTTCACAGACACCGATCGATTGATCGGTGATGCTGCGAAGAACCAAGTTGCG
ATGAACCCCACCAACACAGTTTTTGATGCCAAACACCTGATTGGACGGAGATTTGATGAT
GCTGTTGTACAGTCTGATATGAAGCATTGGCCTTTCATGGTGGTGAATGATGCTGGCAGG
CCCAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGCTTTTATCCAGAGGAGGTGTCT
TCTATGGTTTTGACGAAAATGAAGGAAATCGCAGAGACTTATCTTGGGAAGACCATTACC
AATGCAGTTGTCACAGTACCTGCGTACTTCAATGATTCTCAGCGTCAGGCTACCAAAGAT
GCTGGAACTATTGCTGGTCTCAATGTACTTCGAATCATCAATGAACCAACTGCTGCTGCT
ATTGCTTATGGCTTAGACAAAAAAGTTGGAGCTGAAAGGAATGTGCTGATCTTTGACTTA
GGAGGTGGCACTTTTGATGTGTCAATCCTTACTATTGAAGATGGGATCTTTGAGGTTAAG
TCCACAGCTGGAGACACCCACTTAGGTGGAGAAGACTTTGTCAACCAAATGGTCAACCAT
TTTATTTCAGAGTTCAAGCACAAACATAAGAAAGATATCAGTGAAAACAAGAGGGCAGTT
CGTCGTCTCCGTACTGCTTGTGAACGTGCTAAGTGTACACTTTCTTCCAGCACCCAGGCC
AGTATTGAGATTGATTCTCTGTATGAAGGAATCGACTTCTATACCTCTATCACTCGTGCC
CGGTTTGAAGAATTAAATGCTGATCTGTTCCATGGCACCCTGGACCCTGAAGAGAAAGCT
CTTCGGGATGCCAAGTTAGACAAGTCTCAGATCCATGATATTGTTCTGGTGGGTGGTTCT
ACCCGTATCCCCAAGATTCAGAAACTTCTCCAAGATTTCTTCAATGGAAAAGAACTGAAT
AAGAGCATCACCCCTGATCAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTT
TCTGGAGACAAATTTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCACTTTCT
CTTGGCATTGAAACTGCTGGAGGAGTCATGACTGTTCTTATCAAGCGTAATACTACCATT
CCTACCAAACAGACACAGACCTTCACTACCTACTCCGACAACCAGCCTGGTGTGCTTATT
CGGGTGTATGAAGGTGAGCGTGCCATGACCAAGGACAACAATCTACTTGGAAAGTTTGAA
CTCACAGGCATACGCCCTGCTCCTCGTGGTGTCCCTCAGATTGAGGTCACTTTCGATATT
GATGCTAATGGTATCCTCAATGTCTCTGCTGTGGATAAGAGCACAGGAAAAGAGAGCAAG
ATTACCATCACTAATGACAAGGGCTGCTTGAGCAAAGAAGATATTGAGTGCATGGTCCAG
GAAGCTGAGAAGTACAAAGCTGAAGACGAGAAACAGCGGGACAAGCTGTCTTCCAAGAAT
TCACTTGAGTCTTATGCATTCAACATGAAAGCAACTGTTGAAAATGAAAAACTTCAGGGC
AAGATAAATGATGAAGACAAACAGAAGATTCTTGACAAGTGCAATGAAATCATTAACTGG
CTTGATAAGAACCAGACTGCAGAGAAGGAAGAATTTGAACACCAGCAGAAAGAGTTGGAG
AAAGTCTGCAACCCCATCATCACCAAGCTGTACCAGAGTGCAGGGGGCATGCCAGGAGGA
ATGCCTGGAGGTGGTGGAGCTCCTCCCTCTGGTGGTGCCTCCTCTGGGCCCACCATTGAA
GAGGTTGACTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGR
MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT.RLIGDAAKNQVAMNPTNTVFDAK.LIGRRFDDAVVQSDMKHWPFMVVNDAGR
Retrocopy
MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTDRLIGDAAKNQVAMNPTNTVFDAKHLIGRRFDDAVVQSDMKHWPFMVVNDAGR


Parental protein
PKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDL
PKVQVEYKGETKSFYPEEVSSMVLTKMKEIAE.YLGKT.TNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDL
Retrocopy
PKVQVEYKGETKSFYPEEVSSMVLTKMKEIAETYLGKTITNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDL


Parental protein
GGGTFDVSILTIEDGIFEVKSTAGDSHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLYEGIDFYTSITRA
GGGTFDVSILTIEDGIFEVKSTAGD.HLGGEDF.N.MVNHFI.EFK.KHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLYEGIDFYTSITRA
Retrocopy
GGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFVNQMVNHFISEFKHKHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLYEGIDFYTSITRA


Parental protein
RFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLS
RFEELNADLF.GTLDP.EKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSI.PD.AVAYGAAVQAAILSGDK.ENVQDLLLLDVTPLS
Retrocopy
RFEELNADLFHGTLDPEEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSITPDQAVAYGAAVQAAILSGDKFENVQDLLLLDVTPLS


Parental protein
LGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENK
LGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLI.VYEGERAMTKDNNLLGKFELTGI.PAPRGVPQIEVTFDIDANGILNVSAVDKSTGKE.K
Retrocopy
LGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIRVYEGERAMTKDNNLLGKFELTGIRPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKESK


Parental protein
ITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELE
ITITNDKG.LSKEDIE.MVQEAEKYKAEDEKQRDK.SSKNSLESYAFNMKATVE.EKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELE
Retrocopy
ITITNDKGCLSKEDIECMVQEAEKYKAEDEKQRDKLSSKNSLESYAFNMKATVENEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELE


Parental protein
KVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD
KVCNPIITKLYQSAGGMPGGMPGG...GGAPPSGGASSGPTIEEVD
Retrocopy
KVCNPIITKLYQSAGGMPGGMPGG---GGAPPSGGASSGPTIEEVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide