RetrogeneDB ID:
retro_mputfur_191
Organism:
Location:
AEYP01110567.1:3531-5460 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.9 %
Coverage:
57.9 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
DDB1
Parental gene aliases:
No gene alias available
Parental gene description:
damage-specific DNA binding protein 1, 127kDa [Source:HGNC Symbol;Acc:2717]

Genomic region (view in browser)





>retro_mputfur_191
CTGAACGTTGACAGCAATGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTCACCAAT
TTAGGACCCATTGTGGACATGTGCGTGGTGGATCTGGAGAGGCAGGGGCAGGGGCAGCTG
GTTACTTGCTCCGGGGCTTTCAAGGAAGGTTCCTTGAGAATCATCCGGAATGGAATTGTA
ATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAGGTCTGTGGCCGCTGCGGTCT
GACCCTAACCGGGAGACTGATGACACTCTGGTGCTCTCTTTTGTGGGCCAGACAAGAGTT
CTCATGTTAAATGGAGAAGAGGTGGAAGAAACCGAACTGATGGGTTTCGTGGATGATCAG
CAGACTTTCTTCTGTGGCAATGTGGCTCACCAGCAACTCATCCAGATCACTTCAGCATCT
GTGAGGTTGGTCTCTCAGGAACCCAAAGCTCTGGTCAGTGAGTGGAAAGAGCCTCAGGGC
AAGAACATCAGTGTGGCCTCCTGCAACAGCAGCCAGGTGGTCGTAGCGGTGGGAAGGGCC
CTCTACTACCTGCAGATCCATCCTCAGGAGCTCCAGCAGATCAGCCATACAGAGATGGAA
CACGAAGTGGCCTGCTTGGACATCACCCCGCTGGGCGACAGCAATGGGCTGTCCCCTCTT
TGTGCCATTGGCCTCTGGACAGACATCTCAGCGCGTATCTTGAAGCTGCCCTCTTTTGAG
CTACTGCACAAAGAGATGCTGGGTGGAGAGATCATTCCTCGCTCCATCCTGATGACCACT
TTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCACTTTTCTACTTCGGA
CTCAACATTGAGACAGGCCTGTTGAGCGACCGTAAGAAGGTGACCCTGGGCACCCAGCCC
ACGGTGTTGAGGACTTTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGC
CCCACTGTCATCTACAGCAGCAACCACAAATTGGTCTTCTCCAATGTCAACCTCAAGGAA
GTCAACTACATGTATCCCCTCAATTCTGATGGCTATCCTGACAGCCTGGCACTGGCCAAC
AACAGCACCCTCACCATTGGCACCATTGACGAGATCCAGAAGCTGCATATCCGCACGGTT
CCCCTCTATGAGTCTCCCAGGAAGATCTGCTATCAGGAAGTGTCCCAGTGCTTCGGGGTC
CTCTCCAGCCGTATCGAAGTCCAGGACATGAGTGGCAGCACCACGGCCCTGAGGCCCAGT
GCCAGCACCCTGTCCAGCAGTGTCAGCTCCAGCAAGCTGTTCTCCAGCAGCACCGTGCCG
CATGAGACCTCCTTCGGAGAGGAGGTGGAGGTGCACAACCTCCTCATCATTGACCAGCAC
ACCTTCGAAGTGCTTCATGCCCACCAGTTTCTGCAGAATGAGTATGCCCTCAGCCTGGTC
TCCTGCAAGCTGGGCAAAGACCCCAACATGTACTTCATCGTGGGCACGGCCATGGTGTAT
CCCGAAGAGGCGGAGCCCAAGCAGGGTTGCATCGTGGTCTTTCAGTATTCCGATGGAAAA
CTACAGACTGTGGCCGAGAAGGAAGTGAAGGGAGCCGTGTACTCCATGGTGGAATTTAAC
GGGAAGCTGTTAGCCAGCATCAACAGCACGGTGCGGCTTTATGAGTGGACAACAGAAAAG
GAGCTTCGCATGGAGTGCAATCACTACAACAACATCATGGCCCTCTACCTGAAGACCAAG
GGCAACTTCATCCTGGTGGGCGACCTGATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCC
ATGGAGGGGAACTTTGAAGAGATCGCTCGAGACTTTAATCCTAACTGGATGAGTGCTGTG
GAGATCTTGGATGATGACAATTTCCTGGGGGCCGAAAATGCCTTTAACTTGTTTGTGTGT
CAGAAGGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRV
LNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGI.IHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRV
Retrocopy
LNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIVIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRV


Parental protein
LMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEME
LMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQEL.QISHTEME
Retrocopy
LMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELQQISHTEME


Parental protein
HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQP
HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQP
Retrocopy
HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQP


Parental protein
TVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMVRILSFCIPLDLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGV
TVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM....S...P..LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGV
Retrocopy
TVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMYPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGV


Parental protein
LSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM
LSSRIEVQD.SG.TTALRPSAST..LSSSVSSSKLFSSST.PHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPN.YFIVGTAM
Retrocopy
LSSRIEVQDMSGSTTALRPSAST--LSSSVSSSKLFSSSTVPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNMYFIVGTAM


Parental protein
VYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAY
VYPEEAEPKQG.IVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR.ECNHYNNIMALYLKTKG.FILVGDLMRSVLLLAY
Retrocopy
VYPEEAEPKQGCIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRMECNHYNNIMALYLKTKGNFILVGDLMRSVLLLAY


Parental protein
KPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKD
KPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKD
Retrocopy
KPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide