RetrogeneDB ID:
retro_mputfur_2
Organism:
Location:
GL896912.1:18398610-18399609 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.9 %
Coverage:
93.71 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
WDR5
Parental gene aliases:
No gene alias available
Parental gene description:
WD repeat domain 5 [Source:HGNC Symbol;Acc:12757]

Genomic region (view in browser)





>retro_mputfur_2
ATGGGGACAAAGGAGGCAGGGGATGCTAGAGCAGCAGAGTTGGGCCTCCTCCCCTCATCA
ACCAACCCAAACAAGCAAATGTCTGAAAAACCAAACTATGCTCTTAAATTTACTCTCGTG
GGACATACGGAAGCAGTATCATCGGTTAAGTTTAGTCCTAATGGAGAATGGCTAGCAAGT
TCTTCTGCTGACAAAGTAATTATAATTTGGGGAGCCTATGATGGAAAGTATGAGAAAACA
CTTCATGGTCACAATCTGGAAATATCAGATGTTGCCTGGTCATCAGATTCCAGTCGCCTT
GTTTCTGCCTCAGATGATAAGACGCTAAAGATTTGGGATGTGAGATCTGGAAAATGTTTG
AAAACGCTGAAGGGGCATAGTAATTATGTTTTTTGCTGTAATTTCAATCCACCATCCAAT
CTCATCATTTCAGGATCTTTTGATGAGAGTGTGAAAATATGGGAGGTGAAAACAGGGAAG
TGCCTTAAGACTTTGTCTGCTCATTCTGACCCAGTTTCTGCTGTTCATTTTAATTGTAGT
GGGTCTTTGATTGTGTCAGGTAGCTATGATGGTGTTTGTAGAATTTGGGATGCTGCATCA
GGTCAGTGTTTAAAAACACTTGTTGATGATGATAACCCTCCTATCTCTTTTGTAAAATTT
TCTCCAAACGGAAGATATCTTCTAATTGCAACTTTGGACAATACTCTTAAACTGTGGGAT
TATAGCAGAGGCCGATGTCTGAAAACATACACTGGTCATAAGAATGAGAAATACTGCATA
TTTGCCAATTTTTCAGTTACTGGTGGAAAATGGATTGTGTCTGGATCAGAAGATAATCTG
GTTTACATTTGGAACCTTCAGACTAAAGAGATTGTACAGAAATTACAAGGACATACAGAT
GTTGTAATCTCAGCAGCTTGTCATCCTACAGAAAACATCATTGCATCAGCAGCATTAGGA
AATGACAAAACAATTAAACTGTGGATGAGTAACTACTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK
SS....K....KPNYALKFTL.GHT.AVSSVKFSPNGEWLASSSADK.I.IWGAYDGK.EKT..GH.L.ISDVAWSSDS..LVSASDDKTLKIWDV.SGK
Retrocopy
SSTNPNKQMSEKPNYALKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTLHGHNLEISDVAWSSDSSRLVSASDDKTLKIWDVRSGK


Parental protein
CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV
CLKTLKGHSNYVFCCNFNP.SNLI.SGSFDESV.IW.VKTGKCLKTL.AHSDPVSAVHFN..GSLIVS.SYDG.CRIWD.ASGQCLKTL.DDDNPP.SFV
Retrocopy
CLKTLKGHSNYVFCCNFNPPSNLIISGSFDESVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQCLKTLVDDDNPPISFV


Parental protein
KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA
KFSPNG.Y.L.ATLDNTLKLWDYS.G.CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS.ACHPTENIIASAA
Retrocopy
KFSPNGRYLLIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENIIASAA


Parental protein
LENDKTIKLWKSD
L.NDKTIKLW.S.
Retrocopy
LGNDKTIKLWMSN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide