RetrogeneDB ID:
retro_mputfur_200
Organism:
Location:
GL896898.1:12416308-12416739 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
60.93 %
Coverage:
93.04 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS11
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]

Genomic region (view in browser)





>retro_mputfur_200
ATGATGGCCATGCAGACCGAGCATGCCTACCAAAAGCAGCTGACCATCTTTGAGAAGAAG
AGGGGCCCACTTGGAGAAACTGGTGAGGAAGATCTGCGATACTTCAACCACATGGGTCTG
GGCTTCAGGACACACAGGAGGCCACTGAGAGCACCTATGTTGACAAGAAATGCCCCTTTC
CTGGTCATGTGTCCATCGGAGAGCAGATTCTGTCTGATGTAGTGACCAAGATGAGGATGC
AGAAGACCACTGTCACCTACCGAGACTACCTCCCCTCCATCTGAAAGTACAGCCGTTTCG
AGAAATGCCGCCAAAACATGCATGTGCCCCGTCCTCCTGCTTCTGGGATGTCAGATCAGT
GACATTGTCACAGTGGGCAGTGCCAGCCCTTATGCAACTCTGTGTGCTTCCACACGCACA
AGGTCACCAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPK-EAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKY
M...QTE.AYQKQ.TIF..KKR..LGETG.E.L.RY....GLGF.T...EA.E.TY.DKKCPF.G.VSI...ILS.VVTKM.MQ.T.V..RDYL..I.KY
Retrocopy
MMAMQTEHAYQKQLTIFE-KKRGPLGETGEEDL-RYFNHMGLGFRTHR/EATESTYVDKKCPFPGHVSIGEQILSDVVTKMRMQKTTVTYRDYLPSI*KY


Parental protein
NRFEKRHKNMSVHLSP-CFRDV-QIGDIVTV-GECRPLSKTVRFNVLKVTK
.RFEK...NM.V...P.CF.DV.QI.DIVTV.G.C.PL...V.F...KVTK
Retrocopy
SRFEKCRQNMHVPRPP/CFWDV/QISDIVTV/GQCQPLCNSVCFHTHKVTK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide