RetrogeneDB ID:
retro_mputfur_202
Organism:
Location:
GL896898.1:29232894-29233369 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.08 %
Coverage:
62.5 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
DNAJC8
Parental gene aliases:
No gene alias available
Parental gene description:
DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:HGNC Symbol;Acc:15470]

Genomic region (view in browser)





>retro_mputfur_202
GGAAAGAGCGGGTCTCCTGCTAGGAGAAGGAGCCCTGAGGAAGCATTTATGACCTTCTAC
AATGAAGTAAAACGAATAGAGAAGAGAGACTTAGTTCTAACATCCAAAAATCAGCTTGAA
AGACTGACCTGTTCTGGCTCCTCTAACTTCACTTTGAACCCATTTGAGGTTCTTCAGATG
GATCCTGAAGTGACAGATGAAGGAATAAAAAAGAAGTTTCGACAGAGTTTCATATTAGTG
TATCTTGACTGGAATCAAGATGATGTTGAGAGCACAAAAGTCTTTTGAGGCTGTGGACAA
AGCTTACAAGTTGCTCCCGGGTCAGGAACCAAAGAAAAGGGCTGTGAATCTCATTCAAGC
AGTAAAAGAATACACAAATCACACAGTGAGAGTGAAAGAAGCAATGAAGGACGAAGGAAA
CCCCACGAAGGTGGGGTAGGATTATTCTGAGTTGTTCAAACAAGCAGTAGATAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GESGASAGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAF-EAV
G.SG..A...S.EEAFMTFY.EVK.IEKRD.VLTSKNQ.ERLT..GSS.F.LNPFEVLQ.DPEVTDE.IKK.FRQ..ILV..D.NQDD.....K.F.EAV
Retrocopy
GKSGSPARRRSPEEAFMTFYNEVKRIEKRDLVLTSKNQLERLTCSGSSNFTLNPFEVLQMDPEVTDEGIKKKFRQSFILVYLDWNQDDVE-STKVF\EAV


Parental protein
DKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPTNVEEDDPELFKQAVYK
DKAYKLL..QE.KKRA...IQA.KEY..HTV...K...K.EG.PT.V..D..ELFKQAV.K
Retrocopy
DKAYKLLPGQEPKKRAVNLIQAVKEYTNHTVRV-KEAMKDEGNPTKVG*DYSELFKQAVDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide