RetrogeneDB ID:
retro_mputfur_203
Organism:
Location:
GL896898.1:35448469-35448911 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.32 %
Coverage:
63.11 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
C14orf166
Parental gene aliases:
No gene alias available
Parental gene description:
chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169]

Genomic region (view in browser)





>retro_mputfur_203
AACCCTGATCGACTCAACTGCAAAGATGAAACAGTAACTAGAAATTTTATTGTTTGTCTC
AAAGATCAGAATATCAGACACACACAAGACTGAAAACAGAGGTAATGTGAGATGCATATA
CAACTGGACAAGTTCTTCGAAAAACATCTCCAAGATGTTAGCTTTTCCTTTGAGACCACA
AATCAATACAATGCAACGGACTGGCTCCCCGGATTAGCTGTAAATTGTGAATACGGACAC
AGTACTGAAAAATAAAAATTCCTGGCATCTGAGAATACAAAAAAATGTTGACAATGCGGC
TTAAAAAACAAATTTAAATGTAAATATTCCTGATTTTGAAGCTGGTTTAATGGTTTTGGC
TAAACTTCAGTTTTGTTGCCCCGATGATTATGCAGAAATCCCTACTGCAATTTGCTTTTT
ACATTAGGAGTGTTTATATCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NPAGFNCKDETEFRNFIVWLEDQKIRH-YKIEDRGNLRNIHSSDWP-KFFEKYLKDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNT-KN
NP...NCKDET..RNFIV.L.DQ.IRH..K.E.RGN.R.I....W..KFFEK.L.DV...F.......A.DWL.GLAV..EYG...EK.K.L...NT.KN
Retrocopy
NPDRLNCKDETVTRNFIVCLKDQNIRH\HKTENRGNVRCIYN--WT/KFFEKHLQDVSFSFETTNQYNATDWLPGLAVNCEYGHSTEK*KFLASENT\KN


Parental protein
ADNAAKNAEPLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQ
.DNAA.......N.....PDF.AG.M.LA..LQ....DDY.....AI..L..E.L.Q
Retrocopy
VDNAA*KTNLNVNI----PDFEAGLMVLAK-LQFCCPDDYAEIPTAICFLH*ECLYQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide