RetrogeneDB ID:
retro_mputfur_209
Organism:
Location:
GL896898.1:47862353-47862770 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.19 %
Coverage:
90.32 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
FUNDC1
Parental gene aliases:
No gene alias available
Parental gene description:
FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746]

Genomic region (view in browser)





>retro_mputfur_209
GATGATTATTCTTATAAAGTGGTAGATTTAACTGAGTATACAAGAGGACACCACTGGTGG
AGCTGAGTCTTTGGCCACAGTTCAGTATCTGTGGTAGAAAAATGCCTTGTAACCACCTAG
ATTTAATAGGTGGAGTGACTGGCTGTTGTACAGGGTTTTGGTTCTAGAAAGTCAGAAAAC
TTAAAGCAAGTGTAATAGGCAGTGGTTTTCTTCTTCAGATTCTCCAGTCACAGTGGTGGT
GTGCCGATCAACTGGGATAGAGTTGAAAAACATAAACAAAACAAGAAGATGTGATTAAGA
AATTAGCAAATAAAGAAGCGCCTGAAATCAACAATAAAATCAAAGAAGCAACAGATTTTT
ATCAAGCAGAACATTGTGATATCCAGTGAAATTGTGGGAAGTTGTTGGCTAGGGTTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DDESYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQI-VMGGVTGWCAGFLFQKVGKLAATAVGGGFLLLQI-ASHSGYVQIDWKRVEKDV-NKAK
DD.SY.V.DLTEY.R.HHWW..VFGHSS...VEK..V.T.I...GGVTG.C.GF.F.KV.KL.A...G.GF.LLQI..SHSG.V.I.W.RVEK....K..
Retrocopy
DDYSYKVVDLTEYTRGHHWWS*VFGHSSVSVVEKCLVTT*I/LIGGVTGCCTGFWF*KVRKLKASVIGSGF-LLQI\SSHSGGVPINWDRVEKHK/TKQE


Parental protein
RQIKKRANKAAPEINNIIEEATE-FIKQNIVISSGFVGGFLLGL
..IKK.ANK.APEINN.I.EAT..FIKQNIVISS..VG...LGL
Retrocopy
DVIKKLANKEAPEINNKIKEATD\FIKQNIVISSEIVGSCWLGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide