RetrogeneDB ID:
retro_mputfur_211
Organism:
Location:
GL896898.1:1317113-1317722 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.85 %
Coverage:
58.17 %
Frameshifts:
2
Stop codons:
6


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_211
ATAAATGATGGTGAACTACAGAAAGTCATTGACTTGTCCACAGATGCCATCAAACTAAAT
TCTTTCTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTCATCAAATTACAGAGGCTA
AATGCTGCCATTGGAGACTGTGACAGAGCTATTGAAATAAATCCTGATTCGTCTTAGCCT
TGCAAGTGACGAGAGAAAGCACATAGACTTCTGGGCCATTGGGAAGAAGCAGCACATGAT
CTTGCCCTTGCTTGTAAACTGGATTATGACGAAGATGCTAGTGCAATGCTATAAGAAGTT
TAACTAAGGGCCCAGAAAATTGCTGAACATCAGAGAAAGTATGAGTGAAAACATAAAGAG
CAAGAGATCAAAGAAAGAATAGAAAGGGTTAAGAAGCCTCGGGAGAACATGAGAGAGCCC
AGATGGAGGAAGAAGCCAGAGGACAATCAGGAGCTCAGTATGGGTCTTTCCCAGGTGGCT
TTCCTGGGGGAAATGCCTGGTAATTTTCCTGGAGGAATGCCTGGTATGGCAGGGGGGATG
CCAGGAATGGCAGGAATGCCTGGGCTCAAAGAAGTTCTTAGTGATCCATAAGTTCTTGCA
GCCATGCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEV
.NDGELQK.IDL.TDAIKLN..LAILYAKRASVFIKLQ..NAAI.DCDRAIEINPDS..P.K.R.KAHRLLGHWEEAAHDLALACKLDYDEDASAML.EV
Retrocopy
INDGELQKVIDLSTDAIKLNSFLAILYAKRASVFIKLQRLNAAIGDCDRAIEINPDSS*PCK*REKAHRLLGHWEEAAHDLALACKLDYDEDASAML*EV


Parental protein
QPRAQKIAEHRRKYERKREEREIKERIERVKKARE-EHERAQREEEARRQSGAQYGSFPGGFPGG-MPGNFPGGMPGMAGGMPGMAGMPGLNEILSDPEV
..RAQKIAEH.RKYE.K..E.EIKERIERVKK.RE.EHERAQ.EEEAR.QSGAQYGSFPGGFPGG.MPGNFPGGMPGMAGGMPGMAGMPGL.E.LSDP.V
Retrocopy
*LRAQKIAEHQRKYE*KHKEQEIKERIERVKKPRE/EHERAQMEEEARGQSGAQYGSFPGGFPGG\MPGNFPGGMPGMAGGMPGMAGMPGLKEVLSDP*V


Parental protein
LAAMQ
LAAMQ
Retrocopy
LAAMQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide