RetrogeneDB ID:
retro_mputfur_212
Organism:
Location:
GL896898.1:8387102-8387888 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.8 %
Coverage:
75.07 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_212
GAAGAAAAACCAGATAGTAAGAAGGCGGACGAAAACATAAAGACAGATGAACCATCAAGT
GAAGAGAGTGATCTAGAAATTGACAATGAAGGTGTGATTGAACCAGATACTGATGCCCCT
CAAGAAATGGGAGATGAAGATGTAAAGATAACCGAGGAAATGATGGATCAGGCAAATGAT
AAAAAAGTGGCTGCCATTGATGCCCTAAATGATGGTGAACTACAGAAAGCCATTGACTTA
TTCACAGATGCCATCAAACTAAATCCTCACTTGGCCATTCTGTATGCCAAGAGAGCCAGT
GTCTTCATCAAATTACAGAAGCCAAATGCTGCCATTCGAGACTGTGACAGAGCTATTGAA
TTAAATCCTGATTCAGCTCAGCCTTATAAGTGGCACGGGAAAAGCACATAGACTTCTGGG
CCATTGGGAAGAAGCAGCACATGATCTTGCCCTTGCTTGTAAACTGGATTATGATGAAGA
TGCTAGTGCAATGCTGAAAGAAGTTCAACTGAGGGCCCAGAAAATTGCTGAACATTGGAG
AAAATATGATTGAAAACGTGAAGAGCGAGAGATCAAAGAAAGAATAGAAAGGGTTAAGAA
GCCTCGGGAGAACATGAGAGAGCCCAGAGGGAGGAAGAAGCCAGATGACAATCAGGAGCT
CAGAATGGCTCTTTCCCAGGTGGCTTTCCTGGGGGAATGCCTGGTAATTTTCCTGGAGGA
ATGCCTGGAATGGCAGGGGGGATGCTTGGGATAGCAGAAATGCCTGGGCTCAATGAAATT
CTTAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EEKPDSKKAEENIKTDEPSSEESDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRAS
EEKPDSKKA.ENIKTDEPSSEESDLEIDNEGVIEPDTDAPQEMGDE...ITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNP.LAILYAKRAS
Retrocopy
EEKPDSKKADENIKTDEPSSEESDLEIDNEGVIEPDTDAPQEMGDEDVKITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPHLAILYAKRAS


Parental protein
VFIKLQKPNAAIRDCDRAIEINPDSAQPYKWR-GKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVK
VFIKLQKPNAAIRDCDRAIE.NPDSAQPYKW..GKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQ.RAQKIAEH.RKY..KREEREIKERIERVK
Retrocopy
VFIKLQKPNAAIRDCDRAIELNPDSAQPYKWH\GKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQLRAQKIAEHWRKYD*KREEREIKERIERVK


Parental protein
KARE-EHERAQREEEARRQSGAQYGSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEILS
K.RE.EHERAQREEEAR.QSGAQ.GSFPGGFPGGMPGNFPGGMPGMAGGM.G.A.MPGLNEILS
Retrocopy
KPRE/EHERAQREEEAR*QSGAQNGSFPGGFPGGMPGNFPGGMPGMAGGMLGIAEMPGLNEILS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide