RetrogeneDB ID:
retro_mputfur_213
Organism:
Location:
GL896898.1:11317245-11317837 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.13 %
Coverage:
66.89 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
Rpl5
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L5 [Source:MGI Symbol;Acc:MGI:102854]

Genomic region (view in browser)





>retro_mputfur_213
GATGTCATTTGTCAGATTGTTTATTCCTGTAGAGAAGGAGATATGATAGTCTGTGCAGCT
TATGCTTATGAACTCCCAATGTATGGCATGAAGGTTGGCCTGAAAAATTATGATGCATCA
TATTGTATGGGCATGTTGCTGGTCCACAGGCTTCTCAACATGTTTGGCATGCACAAGATC
TATGAAGGCCAACTGGAGGTGACCAGAGATGAATACAATATGGGAAGATTGATGGTCAAT
GTGGTGACATCACCCACTATCTGGATGCAAGGCTTGCCAGAACTACTACTGGAAATGAAG
TTTTTGGGGCACTCAAGGGAGCTGTGGATGGAGACTTGTCTACCCCTCACAGTACCAAAT
TATTCCCTGATTATGATTCAGAATGCAATGAATTTAATGCAGAACTACAATAGAAGCACA
TCATGGGTCAGAATGTTGCAGATTATATGTGATACCTAATGGAAGAAGATGAAATACTTA
TAAAAAACAATTCTCTCAATACACAAACAATGTAACTCCAGACATAATGGAGAGCATTTT
TAAGAAAGCTCACACTGTTATATGAGAGAATCTATTCTATGGGAAGAAGCCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE-SIDGQPGAFTCYLDAGLARTTTGN
D.ICQI.Y...EGDMIVCAAYA.ELP.YG.KVGL.NY.A.YC.G.LL..RLLN.FGM.KIYEGQ.EVT.DEYN....IDGQ.G..T.YLDA.LARTTTGN
Retrocopy
DVICQIVYSCREGDMIVCAAYAYELPMYGMKVGLKNYDASYCMGMLLVHRLLNMFGMHKIYEGQLEVTRDEYNMG/KIDGQCGDITHYLDARLARTTTGN


Parental protein
KVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDE-DAYKKQFSQYIKNNVTPD-MEEMYKKAHAAIRENPVYEKK
.VFGALKGAVDG.LS.PHSTK.FP.YDSE..EFNAE...KHIMGQNVADYM.YLMEEDE...YKKQFSQY..NNVTPD.ME...KKAH..I.EN..Y.KK
Retrocopy
EVFGALKGAVDGDLSTPHSTKLFPDYDSECNEFNAELQ*KHIMGQNVADYM*YLMEEDE/NTYKKQFSQY-TNNVTPDIMESIFKKAHTVI*ENLFYGKK


Parental protein
P
P
Retrocopy
P


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide