RetrogeneDB ID:
retro_mputfur_215
Organism:
Location:
GL896898.1:21697288-21697986 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
80.17 %
Coverage:
70.61 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_mputfur_215
GTACACCAGACTGCCGTAAAGAATAACCACCCCAGGAAGTACCTTCACAGTGTAGGAGAT
GGAGAGACTGTGCAGTTGGATGTTGTTGAAGGAGAAAAGGGTGCGGATGCAGCAAATGTT
GACAGGCCCTGGTGGAGGTTCCAGTGCAACGCAGTAAATATGCAGCAGACGTAACCATTA
TAGACGCTATCCACATCGCAGGGGTCTTCCACGCAATTACCGGCAGAATTACCAGAATAG
TGCGAGTGGGGAAAAGAAGGAGGCATTGGAAAGTGCTCCCGAAGGCCAGGCCCAACAGCA
CCGGCGCAACCACAAGCAATGGATCCCACCTTACTACATGCAGAGACCCTATGGGTGTCG
ACCACAGTATGCCAACCCTCCCCTGCAGAGAGAAGTGATGGAAGGTGCTGACAACCAGGG
TGCAGGAGAACAAAGTAGACCAGTGAGACAGAATATGTATCGGGCTTATAGACGACGATT
CTGCAGGGCTCCTTCCTCGACAAAGACAACCTAGAGAGGATGGCAACGAGGAAGATAAGA
AAAATCAAGATGAGACCCAGGGTCAGCAGCCACCTCAACATCAGTACCGCTGCAACTTCA
ATTACGGACGCAGATGCCCAGAAAACCCTAAGCCACAAGATGGCAAAGAAACAAAAGCAG
CCGATCCACCATCTGAGAATTCGTCCGCTCCGGAGGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV-TGPGG-VPVQGSKYAAD-RNHYRRYPRHRGPPHNYQQNYQNSESGEKNEGSESAPEGQA
VHQTA.K.N.PRKYL.SVGDGETV..DVVEGEKGA.AANV.TGPGG.VPVQ.SKYAAD.RNHYRRYP..RG.P.NY.QNYQNS.SGEK.E..ESAPEGQA
Retrocopy
VHQTAVKNNHPRKYLHSVGDGETVQLDVVEGEKGADAANV\TGPGG\VPVQRSKYAAD/RNHYRRYPHRRGLPRNYRQNYQNSASGEKKEALESAPEGQA


Parental protein
QQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGP-PRQRQPREDGNEEDKENQGDETQGQQPPQRRY
QQ.R.......PPYYM.RPYG.RPQY.NPP.Q.EVMEGADNQGAGEQ.RPVRQNMYR.YR.RF.R.P.PRQRQPREDGNEEDK.NQ.DETQGQQPPQ..Y
Retrocopy
QQHRRNHKQWIPPYYMQRPYGCRPQYANPPLQREVMEGADNQGAGEQSRPVRQNMYRAYRRRFCRAP\PRQRQPREDGNEEDKKNQ-DETQGQQPPQHQY


Parental protein
RRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEA
R.NFNY.RR.PENPKPQDGKETKAADPP.ENSSAPEA
Retrocopy
RCNFNYGRRCPENPKPQDGKETKAADPPSENSSAPEA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide