RetrogeneDB ID:
retro_mputfur_220
Organism:
Location:
GL896898.1:41468438-41469518 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.57 %
Coverage:
92.09 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_220
ATGGGGAAGGAAAAGACTCATATCAACATTGTCATCAGACACGTAGATTCGGGCAAGTCT
ACCACTACTGTTCATCTGATCTACAAATGTGGTGGGATCGACAAAAGAACTATTGAAAAA
TTCGAGAAGGAGGCTGCCGAGATGGGAAAAGGCTCCTTCAAGTATGCCTGAGTCTTGGAT
AAACTGAAAGCTGAACGTGAACGTGGTATCACCATTGATATCTCCCTGTGGAAATTCGAG
ACCAGCAAGTATTACGTGACCATCATTGATGCTCCAGGACACAGAGACTTTATCAAAAAC
ATGATTACAGGCACATCCCAGGCTGACTGTACTGTCCTGGTTGTTGCTGCTGGTGTTGGT
GAATTTGAAGCAGGTATCTCTAAGAACGGGCAGACCTGTGAGCATGCCCTTCTGGCTTAC
ACACTGAGTGTAAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCC
TACAGCCAGAAGAGATACAAGGAAATCGTTATGGAAGTCAGCATCTACATTAAGAAAATT
GGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATG
CTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCATAAAGATGGG
AATGCCAGTGGAACCACACTGCTTGAAGCTCTGGATTGCATTCTGCCACCAACTCGTCCA
ACTGACAAGCCCTTGCGTCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACT
GTCCCTGTGGGCCGAGTGAAGACTGGTGTTCTTAAGCCTGGCATGGTGGTCACCTTTGCT
CCAGTCAATGTTACAACTGAAGTCAAGTCTGTTGAAATGCACCATGAAGCTTTGAGTGAG
GCTCTCCCTGGGGACAATGTGGGCTTCAATGTCAAGAACATATCTGTCAAAGATGTTCAT
CGTGGCAATGTGGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTTACA
GCTCAGGTGATTATCCTGAACCATCCAGGCCAAATTAGTGCTGGATATGCATCTGTGCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIK
MGKEKTHINIV.I.HVDSGKSTTT.HLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYA.VLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIK
Retrocopy
MGKEKTHINIV-IRHVDSGKSTTTVHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYA*VLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIK


Parental protein
NMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN
NMITGTSQADC.VL.VAAGVGEFEAGISKNGQT.EHALLAYTL.VKQLIVGVNKMDSTEPPYSQKRY.EIV.EVS.YIKKIGYNPDTVAFVPISGWNGDN
Retrocopy
NMITGTSQADCTVLVVAAGVGEFEAGISKNGQTCEHALLAYTLSVKQLIVGVNKMDSTEPPYSQKRYKEIVMEVSIYIKKIGYNPDTVAFVPISGWNGDN


Parental protein
MLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS
MLEPSANMPWFKGWKVT.KDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV.TGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS
Retrocopy
MLEPSANMPWFKGWKVTHKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVKTGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS


Parental protein
EALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVL
EALPGDNVGFNVKN.SVKDV.RGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYA.VL
Retrocopy
EALPGDNVGFNVKNISVKDVHRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYASVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide