RetrogeneDB ID:
retro_mputfur_224
Organism:
Location:
GL896898.1:47554670-47555069 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.97 %
Coverage:
50.76 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
PSMA1
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530]

Genomic region (view in browser)





>retro_mputfur_224
TTTCACAACCAGTATGACAAGGATGTCACTGTTTGGAACCCTCAGGACAGGATTCATTAA
ATTGAGTATGCAATGGAAGCTGTCAAGCAAGGTTCCGCCACAGTCGGTCTGAAATAAAAA
ACCCATGCAGTGTTGGTTGCACTGAAGAGAGCACAGTCAGAGCTTGCAACTCATCAGAAA
AAAATTCTCCATGTGGACAACCATATTGGTATCTCAATTGCGGGACTTACTGCTTATGCT
AGACTGTTACACAATTTTATGTGCCAGGAGTGTTTGGATTACAGATTTGTATTTGACAGA
CCTCTTCCTGTGTCTTGTCTTATATCTCTAATTGGAAGCAAGACCCAGATACCAACCCAA
TGATATGGCCGGAGACCATATGGTATTGGACTGCTGGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDR
F.NQYD.DVTVW.PQ.RIH.IEYAMEAVKQGSATVGLK.KTHAVLVALKRAQSELA.HQKKILHVDNHIGISIAGLTA.ARLL.NFM.QECLD.RFVFDR
Retrocopy
FHNQYDKDVTVWNPQDRIH*IEYAMEAVKQGSATVGLK*KTHAVLVALKRAQSELATHQKKILHVDNHIGISIAGLTAYARLLHNFMCQECLDYRFVFDR


Parental protein
PLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLI
PLPVS.L.SLIGSKTQIPTQ.YGRRPYG.GLL.
Retrocopy
PLPVSCLISLIGSKTQIPTQ*YGRRPYGIGLLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide