RetrogeneDB ID:
retro_mputfur_225
Organism:
Location:
GL896898.1:49831179-49831745 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.18 %
Coverage:
97.98 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
SAR1A
Parental gene aliases:
No gene alias available
Parental gene description:
SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534]

Genomic region (view in browser)





>retro_mputfur_225
ATGTATTTCTCCTTTGAGTGGACCAACAGTGTCCTCCAGTTCCTAGGACTCTATAAGAAA
TACGGAAAACTTGTATTCTTGGGTTTGGACGATGTAGACAAAACCACTCTTCTACACATG
CTCAACAGTGACTGATTGCGCCAATATGTTTCAACATTAGATCCAATATCAGACAGGTGA
CAGTTGCTGGAAAGACTTTTATAACTTTTGATGTTGGCAGTCATGAGCAAGCAAGTCAGG
TTTGGAAAAATTACCTCCCAGCAATCAGTAGGATTGTCTTTCCGGTGGATTGTACAGATC
ATCCTCACCTCATGGAAACCACACTTGAGCTAAATGCTTTAATGACTAATGAAACAATAC
CAATGTGCCAATCCTTATCTTGGATAACAAAAGCAACAGAACAGGTGTAATCAGTGAAGA
AAAGCTCCATGAGATATTTAGGCTTTTTGGATAGACCACAGGAAGGGTATTGTGACCTGG
AAGGAGCTGACTCCCTGCCCCATGGAAGTGTTACTTGCAGAGTGCTCAAGAGGCAAGGCT
ATGGCAAGGGCTTCCACTGGCTTTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFL
M.F.FEW......SVLQFLGLYKK.GKLVFLGLD...KTTLLHML..D.L.Q.V.TL.P.S....T.AG.TF.TFD.G.HEQA..VWKNYLPAI..IVF.
Retrocopy
MYFSFEWT----NSVLQFLGLYKKYGKLVFLGLDDVDKTTLLHMLNSD*LRQYVSTLDPISD/QVTVAGKTFITFDVGSHEQASQVWKNYLPAISRIVFP


Parental protein
VDCADHPRLMESKVELNALMTDETI-SNVPILILGNKIDRTDAISEEKLREIFGLYGQTTG-KGNVTLKELNARPMEVFM-CSVLKRQGYGEGFRWLS
VDC.DHP.LME...ELNALMT.ETI..NVPILIL.NK..RT..ISEEKL.EIF.L.G.TTG.KG.VT.KEL...PMEV...C.VLKRQGYG.GF.WLS
Retrocopy
VDCTDHPHLMETTLELNALMTNETI/TNVPILILDNKSNRTGVISEEKLHEIFRLFG*TTG/KGIVTWKELTPCPMEVLL/CRVLKRQGYGKGFHWLS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide