RetrogeneDB ID:
retro_mputfur_228
Organism:
Location:
GL896899.1:2490291-2490797 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.26 %
Coverage:
80.84 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
RAN
Parental gene aliases:
No gene alias available
Parental gene description:
RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846]

Genomic region (view in browser)





>retro_mputfur_228
GTTGAGGTCCATCCCCTTGTGTTCCATACCCACAAAGAACTTATGAAGTTCCTGGTATGG
GCTATAGCTGGTCAGGACAAATTTGGTGGGCTGAGAGATGGTTAGGATATCCAAGCCCGG
TATGCCACTATAATGTTTGATATAATATGAAGAATTACTTACAAGAATGTGCCTAGCTGG
CATAGTGATCTAGTACAAGTATGTGAAAACATCCCCACTGTGCAATGGGGCAACAAAGTA
GACATTAAGGACAGGAAAGGTAAGGCAAAATCTATTGCCTTCCACCAAAAGAAATTCTAT
GACATTTCTGCCAAAAGTCAATACAACTTGAAAAGCCCTTCTTGTGACCTGCTCGAAAAC
TAATTGGAGATCCTAACTTGGAGTTTGTCACCATGGCTTTTCTTGCCCCACCAGAGGCAG
TCATAGACCCAGCTTTGGGAGCACAGTGTGGGCATGATCTAGAGGTTGCTTAGACCACTG
CTTTCCCGGCTGAGCATGACAATCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL
VEVHPLVFHT.....KF.VW..AGQ.KFGGLRDG..IQA..A.IMFD...R.TYKNVP.WH.DLV.VCENIP.V..GNKVDIKDRK.KAKSI.FH.KK..
Retrocopy
VEVHPLVFHTHKELMKFLVWAIAGQDKFGGLRDG*DIQARYATIMFDII*RITYKNVPSWHSDLVQVCENIPTVQWGNKVDIKDRKGKAKSIAFHQKK--


Parental protein
QQYYDISAKSNYN-FEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL
...YDISAKS.YN..EKPFL..ARKLIGDPNLEFV.M..LAPPE.V.DPAL.AQ..HDLEVA.TTA.P.E.D.L
Retrocopy
--FYDISAKSQYN/LEKPFL*PARKLIGDPNLEFVTMAFLAPPEAVIDPALGAQCGHDLEVA*TTAFPAEHDNL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide