RetrogeneDB ID:
retro_mputfur_231
Organism:
Location:
GL896899.1:23634795-23635271 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.86 %
Coverage:
52.9 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_231
GCTGTAGTTCCTTCAAAGATGCCAGCGTGTATTAGGAAACACCTCACGAAGGGGCAAAAG
TGGCTTCAATTCTAAGAGTGGACAGTGAGGATCTTCTTCCAAGTCTGGAAAGTTGAAAGA
CGGTGACCTTCAGACCATTAAGAAGGAGTTGACCCAGATAAAACAAAAAGTGGATTCTCT
ACTGGAAATCCTGGAAAAATTTGGAGAAAAAATAGAGCAAACAAGGAGAGGTGAAGAATG
GTAAGTCAGAAGAGGAGCAGAGCAGCAGCTCCCTGAAGAAAGAGGAGACCGATGTGAAGG
TGGAGTGTGGGGGCGGGTACAGCTGACTCTGCTGAGGAGGGGGACCTACTCATGATAATG
ATGAAAATGATAATGAAGATTAGGGGGATGGCCAGCTGGGGTTGATCAAGGACGATGAAA
AAGAGGCTGAGGAGGGAGAGGATGACAGAGACAGTGCCAATGGTGAGGATGACTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AVVPSKR-QRVSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQTIKKELTQIKQKVDSLLESLEK-IEKEQTKQGEMKNDKSEEEQSSSSLKKDETNV
AVVPSK..QRV.GNTSRRGKSGFNSKSGQ.GSSSKSGKLK..DLQTIKKELTQIKQKVDSLLE.LEK..EK...KQGE.KN.KSEEEQSSSSLKK.ET.V
Retrocopy
AVVPSKM\QRVLGNTSRRGKSGFNSKSGQ*GSSSKSGKLKDGDLQTIKKELTQIKQKVDSLLEILEK\LEKK*SKQGEVKNGKSEEEQSSSSLKKEETDV


Parental protein
KMESEG-GADDSAEEGDLL-DDDD---NEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
K.E..G.G..DSAEEGDLL..D.D...NED.GD.QL.LIKDDEKEAEEGEDDRDSANGEDDS
Retrocopy
KVECGG\GTADSAEEGDLL/HDNDENDNED*GDGQLGLIKDDEKEAEEGEDDRDSANGEDDS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide