RetrogeneDB ID:
retro_mputfur_232
Organism:
Location:
GL896899.1:23872215-23873513 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
95.39 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
PSMC2
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:9548]

Genomic region (view in browser)





>retro_mputfur_232
ATGCCGGATTACCTCGGTGCCGATCAGTGGAAAACCAAAGAGAAGGAGAAGGATGACAAG
CCTATCCGAGCTCTGGATGAGGGGGATATTGCCTTGCTGAAAACTTACGGTCAAAGCACT
TACTCTAGGCAGATAAAGCAGGTTGAAGATGACATTCAACAACTTCTCAAGAAAATTAAT
GAGCTCACTGGTATTAAAGAGTCTGATACTGGCCTGGTCCCACCAGCACTCTGGGATTTG
GCTGCAGATAAGCAAACACTGCAGAGTGAACAGCCTTTGCAGATTGCAAGGTGTACGAAG
ATAATCAGTGCTGACTCGGAGGACCCAAAGTACATTATCAATGTGAAGCAGTTTGCCAAG
TTTGTTGTGGGCCTCAGTGATCAGGTAGCACCTACCGACATTGAAGAAGGGATGAGAGTT
CGGGTGGACAGAAATAAGTATCAGATTCACATTCCGCTGCCTCCCAAGATTGACCCAACA
GTAAGCATGATGCAGGTGGAAGAAAAACCCGATGTCACTTACAGTGATGTGGGTGGCTGT
AAGGAACAGATTGAGAAACTTCGAGAAGTAGTTGAAACCCCATTACTTCATCCAGAAAGA
TTTGTTAACCTTGGCATTGAGCCTCCCAAAGGTGTGCTGCTCTTTGGTCCACCTGGTACA
GGCAAGACCCTCTGTGCTTGGGCATTTGCTAATAGGACTGATGCTTGCTTCATTCGAGTT
ATTGGATCTGAACTTGTACAGAAGTATGTCGGTGAGGGGGCTCGAATGGTTCGTGAGCTC
TTTGAAATGGCCAGAACGAAAAAAGCCTGCCTCATCTTCTTTGATGAAATTGATGCTATT
GGAGGGGTTCGTTTTGATGATGGTGCTGGAGGAGACAACAAAGTGCAGAGAACAATGCGG
GAACTGATCAATCAGCTGGATGGTTTTGATCCTTGAGGTAACATTAAAGTGCTGATGGCC
ACTAACAGACACACACCCTGGATCCAGCTCTCATGAGGCCAGGGAGACTGGACAGAAAGA
TTGAATTCAGCTTACCTGATCTAGAGGGTCGGACTCACATTTTTAAGATTCATGCTCGTT
CAATGAGTGTCGAAAGAGATATCAGATTTGAATTGTTAGTGCGACTGTGTCCAAATAGCA
CTGGTGCGGAGATTAGAAGTGTCTGCACAGAAGCCAGCATGTTTGCCATCAGAGCACGGC
GCAAAATTGCCACCGAGAAGGATTTCTTGGAGGCTGTAAATAAGGTCATTAAGTCTTACA
CCAAATTCAGTGCTACTCCTCGCTATATGACATACAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPDYLGADQRKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTK
MPDYLGADQ.KTKE.EKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGL.PPALWDLAADKQTLQSEQPLQ.ARCTK
Retrocopy
MPDYLGADQWKTKEKEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLVPPALWDLAADKQTLQSEQPLQIARCTK


Parental protein
IINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPER
II.ADSEDPKYIINVKQFAKFVV.LSDQVAPTDIEEGMRV.VDRNKYQIHIPLPPKIDPTV.MMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPER
Retrocopy
IISADSEDPKYIINVKQFAKFVVGLSDQVAPTDIEEGMRVRVDRNKYQIHIPLPPKIDPTVSMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPER


Parental protein
FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML
FVNLGIEPPKGVLLFGPPGTGKTLCA.A.ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGG.RFDDGAGGDN.VQRTM.
Retrocopy
FVNLGIEPPKGVLLFGPPGTGKTLCAWAFANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGVRFDDGAGGDNKVQRTMR


Parental protein
ELINQLDGFDPRGNIKVLMATNR-PDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA
ELINQLDGFDP.GNIKVLMATNR...TLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL.RLCPNSTGAEIRSVCTEA.MFAIRA
Retrocopy
ELINQLDGFDP*GNIKVLMATNR/THTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLVRLCPNSTGAEIRSVCTEASMFAIRA


Parental protein
RRKIATEKDFLEAVNKVIKSYAKFSATPRYMTYN
RRKIATEKDFLEAVNKVIKSY.KFSATPRYMTYN
Retrocopy
RRKIATEKDFLEAVNKVIKSYTKFSATPRYMTYN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide