RetrogeneDB ID:
retro_mputfur_233
Organism:
Location:
GL896899.1:26199257-26200304 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
97.99 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_233
AGTACCCGCGCCTGGAATCGGGTCGCAACCCCAGCCGCGCCTGCCGCCTGCCACTGCCTC
TGGACCATGGACCCCCGCAAAGTGAGCGAGCTTCGGGCTTTCGTGAAAATGTGTAAGCAG
GATCCGAGCGTTCTGCACACCGAGGAAATGCGTTTCCTGCGGGAGTGGGTGGAGAGCATG
GGGGGTAAAATCCCCCCTGCCACTCATAAAACTAAATCAGAAGACAGTATCAAGGAAGAA
AAACCAGATAGTAAGAAGGCGGAGGAAAACATAAAGACAGATGAACCATCAAGTGAGGAG
AGTGATCTAGAAATTGACAATGAAGGTGTGATTGAACCAGATACCGATGCCCCTCAAGAA
ATGGGAGATGAAAATGCAGAGATAACCGAGGAAATGATGGATCAGGTAAATGATAAAAAA
GTGGCTGCCATTGATGCCCTAAATGATGGTGAACTACAGAAAGCCATTGACTTGTTCACA
GATGCCATCAAACTAAATCCTCGCTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTC
ATCAAATTACAGAAGCCAAATGCTGCCATTCGAGACTGTGACAGAGCTATTGAAATAAAT
CCTGATTCAGCTCAGCCTTATAAGTGGCGCGGGAAAGCACATAGACTTCTGGGCCATTAG
GAAGAAGCAGCACATGATCTTGCCCTTGCTTGCAAACTGGATTATGATGAAGATGCTAGT
GCGATGCTGAAAGAAGTTCAACTGAGGGCCCAGAAAATTGCTGAACATCGGAGAAAATAC
GAGCGAAAACGTGAAGAGCGAGAGATCAAAGAAAGAATAGAAAGGGTTAAGAAGGCTCAG
GAAGAACACGAGAGAGCCCAGAGGGAGGAAGAAGCCAGACGACAATCAGGAGCTCAGTAT
GGCTCTTTCCCAGGTGGCTTTCCTGGGGGAATGTCCGGTAATTTTCCTGGAGGAATGCCT
GGAATGGCAGGGGGGATGCCTGGAATGGCAGGAATGCCTGGGCTCAATGAAATTCTTAGT
GATCCGGAAGTTCTTGCAGCCATACAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
STRAWNRVATPAALAACHCLWTMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSEE
STRAWNRVATPAA.AACHCLWTMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSEE
Retrocopy
STRAWNRVATPAAPAACHCLWTMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSEE


Parental protein
SDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEIN
SDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQ.NDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEIN
Retrocopy
SDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQVNDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEIN


Parental protein
PDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQY
PDSAQPYKWRGKAHRLLGH.EEAAHDLALACKLDYDEDASAMLKEVQ.RAQKIAEHRRKYERKREEREIKERIERVKKA.EEHERAQREEEARRQSGAQY
Retrocopy
PDSAQPYKWRGKAHRLLGH*EEAAHDLALACKLDYDEDASAMLKEVQLRAQKIAEHRRKYERKREEREIKERIERVKKAQEEHERAQREEEARRQSGAQY


Parental protein
GSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEILSDPEVLAAMQ
GSFPGGFPGGM.GNFPGGMPGMAGGMPGMAGMPGLNEILSDPEVLAA.Q
Retrocopy
GSFPGGFPGGMSGNFPGGMPGMAGGMPGMAGMPGLNEILSDPEVLAAIQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide